Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D22.2
         (1271 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85790-1|CAA59790.1|  218|Caenorhabditis elegans mangenese super...    96   4e-20
X77021-1|CAA54319.1|  218|Caenorhabditis elegans manganese super...    96   4e-20
U42844-5|AAB53822.1|  218|Caenorhabditis elegans Sod (superoxide...    96   4e-20
Z81057-6|CAB02913.1|  221|Caenorhabditis elegans Hypothetical pr...    96   5e-20
D85499-1|BAA12821.1|  221|Caenorhabditis elegans manganese super...    96   5e-20
D12984-1|BAA02363.1|  221|Caenorhabditis elegans manganese super...    96   5e-20

>X85790-1|CAA59790.1|  218|Caenorhabditis elegans mangenese
           superoxide dismutase protein.
          Length = 218

 Score = 96.3 bits (229), Expect = 4e-20
 Identities = 46/102 (45%), Positives = 57/102 (55%)
 Frame = +2

Query: 275 LDQRKHXATYIXNLKVXEEKXAQEXXKGDIDXIIKLAXALKXNGGGXXXXSIFWHXLSXN 454
           L  +KH ATY+ NL   EEK  +   KG++   I L  ALK NGGG    SIFW  L+ +
Sbjct: 49  LHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLAKD 108

Query: 455 GGKPSDVLTKXVXKXFGSWDNLXNXXXXXXVXVXGSGWGWXG 580
           GG+PS  L   + + FGS DNL        + V GSGWGW G
Sbjct: 109 GGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWLG 150


>X77021-1|CAA54319.1|  218|Caenorhabditis elegans manganese
           superoxide dismutase protein.
          Length = 218

 Score = 96.3 bits (229), Expect = 4e-20
 Identities = 46/102 (45%), Positives = 57/102 (55%)
 Frame = +2

Query: 275 LDQRKHXATYIXNLKVXEEKXAQEXXKGDIDXIIKLAXALKXNGGGXXXXSIFWHXLSXN 454
           L  +KH ATY+ NL   EEK  +   KG++   I L  ALK NGGG    SIFW  L+ +
Sbjct: 49  LHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLAKD 108

Query: 455 GGKPSDVLTKXVXKXFGSWDNLXNXXXXXXVXVXGSGWGWXG 580
           GG+PS  L   + + FGS DNL        + V GSGWGW G
Sbjct: 109 GGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWLG 150


>U42844-5|AAB53822.1|  218|Caenorhabditis elegans Sod (superoxide
           dismutase) protein3 protein.
          Length = 218

 Score = 96.3 bits (229), Expect = 4e-20
 Identities = 46/102 (45%), Positives = 57/102 (55%)
 Frame = +2

Query: 275 LDQRKHXATYIXNLKVXEEKXAQEXXKGDIDXIIKLAXALKXNGGGXXXXSIFWHXLSXN 454
           L  +KH ATY+ NL   EEK  +   KG++   I L  ALK NGGG    SIFW  L+ +
Sbjct: 49  LHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLAKD 108

Query: 455 GGKPSDVLTKXVXKXFGSWDNLXNXXXXXXVXVXGSGWGWXG 580
           GG+PS  L   + + FGS DNL        + V GSGWGW G
Sbjct: 109 GGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWLG 150


>Z81057-6|CAB02913.1|  221|Caenorhabditis elegans Hypothetical
           protein F10D11.1 protein.
          Length = 221

 Score = 95.9 bits (228), Expect = 5e-20
 Identities = 47/102 (46%), Positives = 56/102 (54%)
 Frame = +2

Query: 275 LDQRKHXATYIXNLKVXEEKXAQEXXKGDIDXIIKLAXALKXNGGGXXXXSIFWHXLSXN 454
           L  +KH ATY+ NL   EEK  +   KG++   I L  ALK NGGG    SIFW  L+ +
Sbjct: 49  LHHQKHHATYVNNLNQIEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKD 108

Query: 455 GGKPSDVLTKXVXKXFGSWDNLXNXXXXXXVXVXGSGWGWXG 580
           GG+PS  L   +   FGS DNL        V V GSGWGW G
Sbjct: 109 GGEPSAELLTAIKSDFGSLDNLQKQLSASTVAVQGSGWGWLG 150


>D85499-1|BAA12821.1|  221|Caenorhabditis elegans manganese
           superoxide dismutase protein.
          Length = 221

 Score = 95.9 bits (228), Expect = 5e-20
 Identities = 47/102 (46%), Positives = 56/102 (54%)
 Frame = +2

Query: 275 LDQRKHXATYIXNLKVXEEKXAQEXXKGDIDXIIKLAXALKXNGGGXXXXSIFWHXLSXN 454
           L  +KH ATY+ NL   EEK  +   KG++   I L  ALK NGGG    SIFW  L+ +
Sbjct: 49  LHHQKHHATYVNNLNQIEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKD 108

Query: 455 GGKPSDVLTKXVXKXFGSWDNLXNXXXXXXVXVXGSGWGWXG 580
           GG+PS  L   +   FGS DNL        V V GSGWGW G
Sbjct: 109 GGEPSAELLTAIKSDFGSLDNLQKQLSASTVAVQGSGWGWLG 150


>D12984-1|BAA02363.1|  221|Caenorhabditis elegans manganese
           superoxide dismutaseprecursor protein.
          Length = 221

 Score = 95.9 bits (228), Expect = 5e-20
 Identities = 47/102 (46%), Positives = 56/102 (54%)
 Frame = +2

Query: 275 LDQRKHXATYIXNLKVXEEKXAQEXXKGDIDXIIKLAXALKXNGGGXXXXSIFWHXLSXN 454
           L  +KH ATY+ NL   EEK  +   KG++   I L  ALK NGGG    SIFW  L+ +
Sbjct: 49  LHHQKHHATYVNNLNQIEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKD 108

Query: 455 GGKPSDVLTKXVXKXFGSWDNLXNXXXXXXVXVXGSGWGWXG 580
           GG+PS  L   +   FGS DNL        V V GSGWGW G
Sbjct: 109 GGEPSAELLTAIKSDFGSLDNLQKQLSASTVAVQGSGWGWLG 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,883
Number of Sequences: 27780
Number of extensions: 116734
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3547715720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)