Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D21.2
         (1237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    28   3.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   4.1  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    27   5.4  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    27   7.1  

>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -3

Query: 683 ALACTVGSMCVGASVDLASSDFGVVASSFLASVDELVSLFLAASVWCSGTILVG--SETG 510
           A + +V S  +G S+   SS FG ++   L+S    VSL      W SGT L G    + 
Sbjct: 91  AWSSSVPSKMLGVSLAAISSSFGEISFLHLSSRYHSVSL----PCWSSGTGLAGLFGASS 146

Query: 509 PFFXSSVFXFXXLSTTLLAFVL 444
               ++ F F   ST +++  L
Sbjct: 147 YLVMTTWFNFSVRSTLIISSFL 168


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 491 PMKXKRVP-FLNQLKLYQNTRQKLLKKVK 574
           P   K +P  LNQ+  YQ  R KLLK VK
Sbjct: 833 PFLSKPLPRLLNQVNYYQFIRNKLLKDVK 861


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 440 MPAQKPTK*LIKXQKXKPMKXKRVPFLNQLKLYQNTRQK-LLKKVKQARQLK 592
           M   KP+K + K  K  P K KR+         +  R+K  +KKVK+   +K
Sbjct: 419 MALPKPSKEMKKKLKKSPPKRKRITTRASYDRQKEQRKKEYIKKVKKEASIK 470


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 686 NALACTVGSMCVGASVDLASSDFGVVASSFLASVDELVSLFLAASVWCSGTI 531
           N L+ +V ++   A VDL+  D+GVV+ S    V ++    L  S  CS T+
Sbjct: 236 NPLSSSVATIIHDAYVDLSIWDYGVVSPSSYNLVMDVHRYQLYESDECSKTL 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,287
Number of Sequences: 5004
Number of extensions: 49872
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)