Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D19.2
         (1320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    39   0.002
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    28   2.5  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   4.4  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   7.6  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 315 LLCARAGLSMQVVRFXFAGQPINAXATPTSLELEAGATIAVYQQQPGG 458
           + CAR G SM  +RF   G+ I    TP  L++E G  I    +Q GG
Sbjct: 64  IYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 24/79 (30%), Positives = 34/79 (43%)
 Frame = -3

Query: 757 QSCLRRRVN*TYHNGIVEVTYSIWYTYNLPYHKLFETHNALRSSAMLLCVTKLLPNTFTD 578
           Q+ + + V   + N   + T +  + Y L   K FET N      M+  V    P T TD
Sbjct: 2   QTAMNKYVETAFQNQ--KTTLTSLFNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTD 59

Query: 577 TNDVSLKLT*G*SLRRVHL 521
              ++ KL  G    RVHL
Sbjct: 60  LEPLANKLE-GPLSERVHL 77


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 711 LLKLPTAFGILIIY-LTTSYLRRIMLCVARLCYYVSQNYFLTLLQIQMMFL 562
           L+ L  A GI+II+ L   +LR+  +     C Y+++ +F  L    M ++
Sbjct: 334 LISLAIAGGIVIIFVLIIKFLRQTRIIAKSSCDYITRYWFRVLFNACMRWV 384


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 681 LIIYLTTSYLRRIMLCVARLCYYVSQNYFL 592
           L+I + T Y RRI+ C A LC  +   Y+L
Sbjct: 39  LLIVVITLY-RRIVECCASLCSLIFSKYYL 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,569
Number of Sequences: 5004
Number of extensions: 43473
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)