Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D19.2
         (1320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like ...    42   7e-04
U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like ...    42   7e-04
AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo (ubiquit...    42   7e-04
U50311-5|AAX22295.1|  299|Caenorhabditis elegans Serpentine rece...    29   7.3  

>X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 7e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +3

Query: 327 RAGLSMQVVRFXFAGQPINAXATPTSLELEAGATIAVYQQQPGG 458
           R G+++  +RF F G+ IN   TP +LE+E    I VYQ+Q GG
Sbjct: 47  RTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 7e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +3

Query: 327 RAGLSMQVVRFXFAGQPINAXATPTSLELEAGATIAVYQQQPGG 458
           R G+++  +RF F G+ IN   TP +LE+E    I VYQ+Q GG
Sbjct: 47  RTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo
           (ubiquitin-related) homologprotein 1 protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 7e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +3

Query: 327 RAGLSMQVVRFXFAGQPINAXATPTSLELEAGATIAVYQQQPGG 458
           R G+++  +RF F G+ IN   TP +LE+E    I VYQ+Q GG
Sbjct: 47  RTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>U50311-5|AAX22295.1|  299|Caenorhabditis elegans Serpentine
           receptor, class sx protein34, isoform c protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = -1

Query: 747 FVDVSTKHITMELLKLPTAFGIL--IIYLTTSYLRRIMLCVARLCYYVSQNYFL-TLLQI 577
           F D+ T H    LL +PT  G++    ++    + R   C     Y    +Y L T LQ+
Sbjct: 67  FFDIQTSHFVCTLLNIPTLIGVISGSCWILAMGIDRFFACKWPASYRSLVSYSLYTFLQL 126

Query: 576 QMMFL 562
              F+
Sbjct: 127 VFPFI 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,885,587
Number of Sequences: 27780
Number of extensions: 253055
Number of successful extensions: 441
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3694370690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)