Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D18.2
         (1282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   3.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   7.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -3

Query: 926 PPPLXGGXPPPXGXTPPXXFKXPPPXPG 843
           PPP     PPP G  PP     PPP PG
Sbjct: 9   PPP----PPPPPGFEPPSQ-PPPPPPPG 31



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 236 PPPXGXXPPXXXPPP 192
           PPP G  PP   PPP
Sbjct: 13  PPPPGFEPPSQPPPP 27


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 926 PPPLXGGXPPPXGXTPPXXFKXPPP 852
           PPP     PP     PP     PPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPP 174


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 162 PPPXXPXPXXXGGGXXGGXXPXXGGXXXPPXPPP 263
           P P  P     GG       P   G   PP PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,513
Number of Sequences: 5004
Number of extensions: 26854
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)