Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D18.2
         (1282 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.89 
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    25   6.3  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    21   6.5  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.5 bits (58), Expect = 0.89
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -3

Query: 947 FXXGFFXPPPLXGGXPPPXGXTPPXXFKXPPPXPGGKXG 831
           F  GF   P L    PPP    PP     P P  GG  G
Sbjct: 569 FPAGF---PNLPNAQPPPAPPPPPPMGPPPSPLAGGPLG 604



 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 236 PPPXGXXPPXXXPPPXXXXGXXGGG 162
           PPP    PP   PPP    G   GG
Sbjct: 581 PPPAPPPPPPMGPPPSPLAGGPLGG 605



 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 162 PPPXXPXPXXXGGGXXGG 215
           PPP  P P    GG  GG
Sbjct: 588 PPPMGPPPSPLAGGPLGG 605


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = -3

Query: 947 FXXGFFXPPPLXGGXPPPXGXTPPXXFKXPPPXPG 843
           +  G   P P   G P P    PP      PP PG
Sbjct: 57  YKAGKIAPNPFTAGPPKPNISIPPPTMNM-PPRPG 90


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 21.4 bits (43), Expect(2) = 6.5
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = -3

Query: 899 PPXGXTPPXXFKXPPPXPG 843
           P     PP  F  P P PG
Sbjct: 375 PNPARAPPRNFTMPGPGPG 393



 Score = 21.0 bits (42), Expect(2) = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 911 GGXPPPXGXTP 879
           GG PPP   TP
Sbjct: 341 GGGPPPSSATP 351


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,494
Number of Sequences: 2352
Number of extensions: 10698
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 147148920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)