Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D16.2
         (1531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    40   7e-04
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    36   0.011
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    27   9.1  

>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 467

 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 1090 IMLILTLNPERYTGYKGXSAHRIWRSIYQEXWF 1188
            + + L  NPER+TGY G  +  IWRSIY++  F
Sbjct: 137  VYVSLVQNPERFTGYAGDHSAAIWRSIYEQNCF 169


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 571

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 1090 IMLILTLNPERYTGYKGXSAHRIWRSIYQE 1179
            + + L  NPER+TGY G  + RIW  IY +
Sbjct: 182  VYVSLLENPERFTGYSGPHSTRIWEMIYNQ 211


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 802 FSLXHLLFIRPRNGPFPFF-KIDPYXKTE 719
           FS+  LL  R  +  F FF KIDPY + E
Sbjct: 386 FSMRALLVNRQYSSAFAFFWKIDPYIRNE 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,398
Number of Sequences: 5004
Number of extensions: 50931
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 858281342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)