Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D14.2
         (1266 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           33   0.36 
07_01_1201 - 11419851-11419913,11420090-11420311                       29   5.9  
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44...    29   7.8  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 33.5 bits (73), Expect = 0.36
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 907 RKXHASRREKGGQVSGXRQVRNRRAHEGAFQGETPG 800
           R     RR  GG+V+G    R+RR   GA++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 724 LRPPDEHHKNRRSSXRWRN--PTGL*RYQAFPPGKLPRALSCSEPAXYRIP 870
           L PP           +WR+  PTG   + +FP G LP A    +PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>10_01_0038 +
           437738-438122,439215-439501,440111-440375,440687-440784
          Length = 344

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 27/88 (30%), Positives = 35/88 (39%)
 Frame = -3

Query: 838 RAHEGAFQGETPGIFIVLSGFATXDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 659
           R H+  F G   G    L G +   LS      R GGG     P+TR   G     G + 
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271

Query: 658 TCFFLRYPLIXWITVLPPLSELIPLAAA 575
           T    R  +     + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,086,224
Number of Sequences: 37544
Number of extensions: 378976
Number of successful extensions: 815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3922562724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)