Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D12.2
         (1277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   1.4  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    28   3.2  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    27   4.2  
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha...    27   5.6  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   7.3  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 489 NDCGKINKYNLEEYVKNSINYQIGKLIKAVNNATVYLDSLS 611
           +DC KI K  L+ +V+N  + Q     K +    V+LDS S
Sbjct: 564 SDCSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWLDSSS 604


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = +3

Query: 369 HNLTAVADSLYKKAKRITPKVIHHNDPEKILAKLLD--TFSCNDC-GKIN---KYNLEEY 530
           H+++  +++ Y+KA      V  H+D E +L    D   F  ND    +N    ++  E 
Sbjct: 219 HSISLNSNNRYRKADASAAVVDEHSDEEALLCAFTDHPHFYLNDSRNSLNYFCPFSAFED 278

Query: 531 VKNSINYQIGKLIKAVNN 584
           + NS+    GK +   +N
Sbjct: 279 ISNSVRSSCGKRLSPSSN 296


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 7   TRXLRESLXFPQTPMKLSKNKTGSTAGAQNSSN 105
           T+ +R S    + P + + N TGS +G+ NSS+
Sbjct: 26  TQRVRPSYELIEAPTRQATNGTGSVSGSPNSSS 58


>SPAC29B12.04 |snz1||pyridoxine biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 402 KKAKRITPKVIHHNDPEKILAKLLDTFSCNDCGKINKYNLEEYVK 536
           K+A+ I   V H+NDP KILA++ +       G+ +  +LEE  K
Sbjct: 248 KRARAIVRAVTHYNDP-KILAEVSENLGAAMVGR-SVSSLEEKEK 290


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 477 TFSCNDCGKINKYNLEEYVKNSINYQIGKLIKAVN 581
           TF+CN CG   K + E     S   ++GKL+  VN
Sbjct: 159 TFACNVCGTELKDDEESAEMMSSQKRLGKLMGQVN 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,681,308
Number of Sequences: 5004
Number of extensions: 68468
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)