Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D12.2
         (1277 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.      29   5.3  
U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein...    29   5.3  
U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein...    29   5.3  

>Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical
           protein ZK678.1 protein.
          Length = 719

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 326 NGSD-RSEARQRIINTQFDGRGGLVVQKSQKDHAQSDPSQRSRENTSEI 469
           NG D R  +R+R I    D +      K+ +DH++  PS+    N SE+
Sbjct: 390 NGKDNRFTSRRRKIEDILDNKFAAAAAKAYRDHSEDAPSEPYIPNQSEM 438


>Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.
          Length = 722

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 326 NGSD-RSEARQRIINTQFDGRGGLVVQKSQKDHAQSDPSQRSRENTSEI 469
           NG D R  +R+R I    D +      K+ +DH++  PS+    N SE+
Sbjct: 390 NGKDNRFTSRRRKIEDILDNKFAAAAAKAYRDHSEDAPSEPYIPNQSEM 438


>U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 326 NGSD-RSEARQRIINTQFDGRGGLVVQKSQKDHAQSDPSQRSRENTSEI 469
           NG D R  +R+R I    D +      K+ +DH++  PS+    N SE+
Sbjct: 390 NGKDNRFTSRRRKIEDILDNKFAAAAAKAYRDHSEDAPSEPYIPNQSEM 438


>U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 326 NGSD-RSEARQRIINTQFDGRGGLVVQKSQKDHAQSDPSQRSRENTSEI 469
           NG D R  +R+R I    D +      K+ +DH++  PS+    N SE+
Sbjct: 390 NGKDNRFTSRRRKIEDILDNKFAAAAAKAYRDHSEDAPSEPYIPNQSEM 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,252,776
Number of Sequences: 27780
Number of extensions: 377947
Number of successful extensions: 989
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3568584636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)