Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D12.2
         (1277 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   1.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   7.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   7.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   7.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   7.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   7.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   10.0 

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 519 LEEYVKNSINYQIGKLIKAVNNATVYLDSLS 611
           L  + KN+    I KL+   NNA +Y  S++
Sbjct: 506 LINFSKNNTIVDISKLVNKRNNAKIYTSSVN 536


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 71  VLFLDSFMGVCGXLKDS 21
           ++F+ SF G CG +++S
Sbjct: 61  IIFVISFFGCCGAIRES 77


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 296 MHLWRLFAWENGSDRSEARQ-RIINTQFD 379
           +H W+ F ++ GSD  E RQ  I++ ++D
Sbjct: 34  LHEWKFFDYDFGSD--ERRQDAILSGEYD 60


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +2

Query: 113 NIGHSSERASQRNIIDKYHSSLCRVSLTRFNYESRAKVIRQHRSTGYKTFIHDYSALSWV 292
           ++G S+E +  +  +  +      +SLT  NY   A  I+  RS GY   I  Y     +
Sbjct: 176 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGY-YLIQIYIPSGLI 234

Query: 293 AMHLWRLFAWEN 328
            +  W  F W N
Sbjct: 235 VIISWVSF-WLN 245


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 296 MHLWRLFAWENGSDRSEARQ-RIINTQFD 379
           +H W+ F ++ GSD  E RQ  I++ ++D
Sbjct: 34  LHEWKFFDYDFGSD--ERRQDAILSGEYD 60


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +2

Query: 113 NIGHSSERASQRNIIDKYHSSLCRVSLTRFNYESRAKVIRQHRSTGYKTFIHDYSALSWV 292
           ++G S+E +  +  +  +      +SLT  NY   A  I+  RS GY   I  Y     +
Sbjct: 115 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGY-YLIQIYIPSGLI 173

Query: 293 AMHLWRLFAWEN 328
            +  W  F W N
Sbjct: 174 VIISWVSF-WLN 184


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 296 MHLWRLFAWENGSDRSEARQ-RIINTQFD 379
           +H W+ F ++ GSD  E RQ  I++ ++D
Sbjct: 34  LHEWKFFDYDFGSD--ERRQDAILSGEYD 60


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 417 SFWLFCTTSPPR 382
           SFWL    SPPR
Sbjct: 252 SFWLHMDASPPR 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,882
Number of Sequences: 438
Number of extensions: 5461
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43822995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)