Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D11.2
         (1264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    32   0.15 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   2.4  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   9.6  

>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 284

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 1110 KKKKKKXFFXXKKKKKKKXGGXXXKKKKXXGGXKKKKKKXXXKKKK 1247
            K++K+K     KK KKK   G     KK     KKKKK+   K K+
Sbjct: 164  KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKE 209



 Score = 29.9 bits (64), Expect = 0.78
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 1113 KKKKKXFFXXKKKKKKKXGGXXXKKKKXXGGXKKKKKKXXXKKK 1244
            KK +K     KK+ KKK      KK+K     K++KKK   K K
Sbjct: 190  KKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLK 233



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = +3

Query: 1086 KKKXXXXXKKKKKKXFFXXKKKKKKKXGGXXXKKKKXXGGXKKKKKKXXXKKKKXG 1253
            +K+     KKK KK          KK      KKKK     KKK K+   KK+K G
Sbjct: 166  EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEH---KKKDKESSSKKRKSG 218



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 1114 KKKKKXFFXXKKKKKKKXGXXXXKKKXXGGGXKKKKKXXXXKKK 1245
            KK +K     KK+ KKK      KK+  G   K++KK    K K
Sbjct: 190  KKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLK 233


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/54 (29%), Positives = 17/54 (31%)
 Frame = -3

Query: 1247 FFFFXXXXXXXXXXXXXXXXXFXXXXPXFFFFFFFXXKKXFFFFFFXXXXXFFF 1086
            FFFF                      P F FFF+F     F F F      FFF
Sbjct: 80   FFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFF 133


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 1086 KKKXXXXXKKKKKKXFFXXKKKKKKKXGGXXXKKKKXXGGXKKKKKK 1226
            KK+      +K +      ++K++KK      K+KK     K+KKKK
Sbjct: 426  KKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,180,202
Number of Sequences: 5004
Number of extensions: 9808
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 685576410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)