Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D10.2
         (1271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   7.3  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   9.7  

>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 814 IGHSLGAHLGGYCGHELQKK 873
           +G+SLGA +  YC  EL+KK
Sbjct: 573 VGYSLGARVIYYCLRELEKK 592


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +1

Query: 601 HKKWIENLANALLDIDGNESATVIIVDWRGGSQPPYGQAVANIRLVGVMTAHLIHNIYEV 780
           H +W  ++  A   ID  E+  +  +DW GG Q     +  +I+ V +   H +   +E+
Sbjct: 22  HNRWHPDIPFAE-SIDEGETVKIECLDWTGG-QIKNDDSAEDIKNVDLTRIHYLSGPFEI 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,812,338
Number of Sequences: 5004
Number of extensions: 73365
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)