Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D08.2
         (1253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    36   0.016
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    32   0.19 
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    31   0.44 
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    28   2.4  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    27   4.1  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
 Frame = +3

Query: 681 EEIRRTVLVADTGS-LTSQQLIDHFCQAGEVKYMRFCSRDVD--TLKYALIEMTEQEAVI 851
           E  RRTV V+   + LTS++L D F QAG V+  +     +   +   A +E   +++V 
Sbjct: 236 ERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQ 295

Query: 852 KALHLNGSTLDGQTIQVYHATQSICKPXTKSNEAAQ 959
            A+ L+G  L G  + +   T++  +   K+ EAA+
Sbjct: 296 AAIALSGKRLLGLPV-IVQLTEA--EKNRKAREAAE 328


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = +3

Query: 732 QQLIDHFCQAGEVKYMRFCSRDVDTL-KYALIEMTEQEAVIKALH-LNGSTLDGQTIQVY 905
           Q L  HF + G+V+ ++  ++    +  +A + M +++A  +A++ LNG+ +DG+ I V 
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVD 181

Query: 906 HATQSICKPXTKSNEAAQRE 965
            A        T   +A+  E
Sbjct: 182 WAVSKDAFEATTLKDASSEE 201


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 276 LFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNVA-QHMTNTVFIDRALIVIP 452
           +F   G+  DI L   +RD          ++KY D  +  +A  +MTN   +DR + V  
Sbjct: 50  VFSEFGEPVDINL---VRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDH 106

Query: 453 VQSGEIPDEHK 485
           V S ++P + K
Sbjct: 107 VASYKVPQKEK 117


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 231 VXNIAPQAXKXQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNVA 401
           V N+A +A +  +   FG  G ID +R+   +RD    +     Y+++ D+  V+ A
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCGSIDYVRI---VRDPKTNLGKGFAYIQFKDTMGVDKA 327


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
 Frame = +3

Query: 456 QSGEIPDEHKALEMSSNGTL---VPGLSSVEPRLPMHVINTLDGIPPNQVIQTHDANLTA 626
           QSG++P++    ++ SNG L    P  S+  PR  ++       +  ++ +QT    LT 
Sbjct: 76  QSGQLPNQQLLQQLQSNGALQQGTPEPSNTRPRPQLNAQEQTMLLVRHRQLQTAQNYLTE 135

Query: 627 AGXXXXXXXXXXXDSRKIEEIRRTVLVADTGSLT 728
                         + +++   R  LV     LT
Sbjct: 136 MKEALGRIKNELSTNERLDTSAREALVKQESELT 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,970,825
Number of Sequences: 5004
Number of extensions: 73027
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)