Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D08.2
         (1253 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0768 - 5935319-5935417,5935536-5935583,5935721-5935780,593...    49   9e-06
06_03_0374 + 20026179-20026661,20027170-20027280,20027372-200274...    43   6e-04
02_02_0238 + 8163922-8164362,8165008-8165118,8165205-8165249,816...    43   6e-04
08_01_0112 - 885965-886010,887084-887145,887908-887976,888076-88...    41   0.002
04_04_0435 - 25170348-25170593,25170989-25171189,25171580-251717...    37   0.038
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541...    32   1.1  
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286...    31   1.4  
03_05_1134 + 30624373-30624378,30624474-30624592,30624729-306248...    31   2.5  
05_03_0259 - 11161447-11161706,11161764-11164266                       29   5.8  

>01_01_0768 -
           5935319-5935417,5935536-5935583,5935721-5935780,
           5935884-5935996,5936082-5936154,5936895-5936939,
           5937020-5937133,5937227-5937253,5937963-5938247
          Length = 287

 Score = 48.8 bits (111), Expect = 9e-06
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +3

Query: 681 EEIRRTVLVADTG-SLTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAVIKA 857
           + IRRTV V+D   ++T ++L D F   G+V   R C      L++A IE  ++E    A
Sbjct: 128 DSIRRTVYVSDIDHTVTEERLADIFANCGQVVDCRICGDPHSVLRFAFIEFADEEGARTA 187

Query: 858 LHLNGSTLDGQTIQVYHATQSI 923
           L+L G+ L    ++V  +  +I
Sbjct: 188 LNLGGTMLGFYPVRVLPSKTAI 209


>06_03_0374 +
           20026179-20026661,20027170-20027280,20027372-20027416,
           20029610-20029682,20029762-20029874,20030009-20030068,
           20031518-20031565,20031658-20031726,20032928-20033092,
           20033630-20033680,20034774-20034803
          Length = 415

 Score = 42.7 bits (96), Expect = 6e-04
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 681 EEIRRTVLVADTGS-LTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAVIKA 857
           + +RRTV V+D    +T Q+L + F   G+V   R C      L++A IE  +      A
Sbjct: 184 DSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFIEFADDVGARAA 243

Query: 858 LHLNGSTLDGQTIQVYHATQSI 923
           L L G+ L    ++V  +  +I
Sbjct: 244 LTLGGTVLGYYPVRVLPSKTAI 265


>02_02_0238 +
           8163922-8164362,8165008-8165118,8165205-8165249,
           8166066-8166138,8166215-8166327,8166430-8166489,
           8167287-8167334,8167422-8167490,8167618-8167679,
           8167771-8167828
          Length = 359

 Score = 42.7 bits (96), Expect = 6e-04
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 681 EEIRRTVLVADTGS-LTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAVIKA 857
           + +RRTV V+D    +T Q+L + F   G+V   R C      L++A IE  +      A
Sbjct: 170 DSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFIEFADDAGARAA 229

Query: 858 LHLNGSTLDGQTIQVYHATQSI 923
           L L G+ L    ++V  +  +I
Sbjct: 230 LTLGGTMLGYYPVRVLPSKTAI 251


>08_01_0112 -
           885965-886010,887084-887145,887908-887976,888076-888123,
           888205-888264,888392-888504,888578-888650,888725-888769,
           889382-889527,890782-890842,891913-892056,892164-892400
          Length = 367

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 21/67 (31%), Positives = 36/67 (53%)
 Frame = +3

Query: 723 LTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAVIKALHLNGSTLDGQTIQV 902
           +T +QL   F   G+V   R C      L++A IE T++E+   AL+L+G+ L    ++V
Sbjct: 197 VTEEQLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEESARAALNLSGTVLGYYPVRV 256

Query: 903 YHATQSI 923
             +  +I
Sbjct: 257 LPSKTAI 263


>04_04_0435 -
           25170348-25170593,25170989-25171189,25171580-25171756,
           25172284-25172418,25173131-25173262,25173292-25173369,
           25173452-25174108,25174210-25174328,25175897-25176173
          Length = 673

 Score = 36.7 bits (81), Expect = 0.038
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
 Frame = +3

Query: 720 SLTSQQLIDHFCQAGEVKYMRFCSRDVD---TLKYALIEMTEQEAVIKALH-LNGSTLDG 887
           S+T  QL + F QAG+V  +R C RD+    +L YA +         +AL  LN + L+G
Sbjct: 49  SVTDSQLYELFSQAGQVMSVRVC-RDISSRRSLGYAYVNFNNPVDAARALELLNFAPLNG 107

Query: 888 QTIQVYHATQ 917
           + I+V ++ +
Sbjct: 108 KPIRVMYSNR 117


>08_01_0620 -
           5416197-5416225,5416333-5416652,5417144-5417235,
           5417304-5417394,5417489-5417577,5417812-5417929,
           5418007-5418098,5418180-5418215,5418323-5418403,
           5418510-5418617,5418809-5418901,5419045-5419146,
           5419345-5419449,5419526-5419612,5419952-5420227
          Length = 572

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 720 SLTSQQLIDHFCQAGEVKYMRFCSR-DVDTLKYALIEMTEQEAVIKALHLNGSTLDGQTI 896
           +L   Q+ + F + GEV  +R  +  D  +  +  ++    E   KAL L+G  LDG+ +
Sbjct: 321 NLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELHGCDLDGRPV 380

Query: 897 QV 902
           ++
Sbjct: 381 RL 382


>03_01_0369 -
           2863159-2863491,2864149-2864214,2865045-2865140,
           2865530-2865632,2865771-2865838,2866570-2866712,
           2867050-2867242,2867602-2867640,2867742-2867807,
           2868617-2869651
          Length = 713

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +3

Query: 465 EIPDEHKALEMSSNGTLVPGLSSVEPRLPMHVINTLDGIPPNQV 596
           E P++ +A E  S GTLV G   VE ++    I TL  +PPNQV
Sbjct: 394 EYPEKGQAREFGSTGTLVSG---VEAKIVD--IKTLKHLPPNQV 432


>03_05_1134 +
           30624373-30624378,30624474-30624592,30624729-30624807,
           30625784-30625858,30625954-30626028,30626314-30626651,
           30626881-30627004,30627070-30627093
          Length = 279

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = +3

Query: 693 RTVLVADTGSLTSQQLI-DHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAVIKALHLN 869
           RTV V +   L  ++ + + F  +GE++++      V T + A +   + +A+  AL L+
Sbjct: 9   RTVRVRNISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKALEIALLLS 68

Query: 870 GSTLDGQTIQVYHATQSICKPXT 938
           G+T+  + + +  A   I  P T
Sbjct: 69  GATIVDRVVNITPAEDYIYIPVT 91


>05_03_0259 - 11161447-11161706,11161764-11164266
          Length = 920

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +3

Query: 408 MTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPG--LSSVEPRLPMHVINTL-DG 578
           M   VFI  AL+    + G++ + +  L+   N  ++PG  +S++E     HV++T+ DG
Sbjct: 635 MNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADG 694

Query: 579 IP 584
            P
Sbjct: 695 NP 696


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,207,555
Number of Sequences: 37544
Number of extensions: 481798
Number of successful extensions: 1161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3876004116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)