Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_D08.2
(1253 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC047322-1|AAH47322.1| 386|Homo sapiens Similar to expressed se... 172 2e-42
M74002-1|AAA35554.1| 484|Homo sapiens arginine-rich nuclear pro... 122 2e-27
BC040436-1|AAH40436.1| 483|Homo sapiens splicing factor, argini... 122 2e-27
BC032727-1|AAH32727.1| 246|Homo sapiens SFRS11 protein protein. 122 2e-27
BC017359-1|AAH17359.1| 394|Homo sapiens SFRS11 protein protein. 122 2e-27
BC009840-1|AAH09840.1| 247|Homo sapiens SFRS11 protein protein. 122 2e-27
BC002784-1|AAH02784.1| 321|Homo sapiens SFRS11 protein protein. 122 2e-27
AL353771-6|CAI22335.1| 484|Homo sapiens splicing factor, argini... 122 2e-27
AL353771-5|CAI22334.1| 483|Homo sapiens splicing factor, argini... 122 2e-27
AL353771-4|CAI22333.1| 389|Homo sapiens splicing factor, argini... 122 2e-27
BC112343-1|AAI12344.1| 508|Homo sapiens SFRS12 protein protein. 82 4e-15
BC067770-1|AAH67770.1| 508|Homo sapiens splicing factor, argini... 82 4e-15
AF459094-1|AAL67778.1| 508|Homo sapiens splicing factor, argini... 82 4e-15
U28686-1|AAB17212.1| 157|Homo sapiens RNPL protein. 31 8.8
BC006825-1|AAH06825.1| 157|Homo sapiens RNA binding motif (RNP1... 31 8.8
>BC047322-1|AAH47322.1| 386|Homo sapiens Similar to expressed
sequence AI450757 protein.
Length = 386
Score = 172 bits (419), Expect = 2e-42
Identities = 97/271 (35%), Positives = 149/271 (54%), Gaps = 8/271 (2%)
Frame = +3
Query: 216 TXVXQVXNIAPQAXKXQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVN 395
T V QV N++ QM+TLF +LG+I+++RLYP + S++CYVK+ D ++V
Sbjct: 18 TSVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPP-DNAPLAFSSKVCYVKFRDPSSVG 76
Query: 396 VAQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGLSSVEPRLPMHVINTLD 575
VAQH+TNTVFIDRALIV+P G+IP+E KAL + + + L LP+ N L
Sbjct: 77 VAQHLTNTVFIDRALIVVPCAEGKIPEESKALSLLAPAPTMTSLMPGAGLLPIPTPNPLT 136
Query: 576 --GIPPNQV----IQTHDANLTAAGXXXXXXXXXXXDSRKIEEIRRTVLVADTGS--LTS 731
G+ + + D N+ G D KI+EIRRTV V + S T+
Sbjct: 137 TLGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTA 196
Query: 732 QQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAVIKALHLNGSTLDGQTIQVYHA 911
QL++ F Q GEVK++R + ++A +E +Q +V +AL NG + +++ H+
Sbjct: 197 DQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS 256
Query: 912 TQSICKPXTKSNEAAQREIXXAMCXVKXAQN 1004
+I KP + +AA +E+ M V+ AQ+
Sbjct: 257 NNAIVKPPEMTPQAAAKELEEVMKRVREAQS 287
>M74002-1|AAA35554.1| 484|Homo sapiens arginine-rich nuclear
protein protein.
Length = 484
Score = 122 bits (295), Expect = 2e-27
Identities = 58/106 (54%), Positives = 75/106 (70%)
Frame = +3
Query: 210 GXTXVXQVXNIAPQAXKXQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSAN 389
G T V QV N++P A QM+TLFG+LGKID++RL+P D PV SR+C+VK++D +
Sbjct: 30 GGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPP-DDSPLPVSSRVCFVKFHDPDS 88
Query: 390 VNVAQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGL 527
VAQH+TNTVF+DRALIV+P G IPDE KAL + + V GL
Sbjct: 89 AVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGL 134
>BC040436-1|AAH40436.1| 483|Homo sapiens splicing factor,
arginine/serine-rich 11 protein.
Length = 483
Score = 122 bits (295), Expect = 2e-27
Identities = 58/106 (54%), Positives = 75/106 (70%)
Frame = +3
Query: 210 GXTXVXQVXNIAPQAXKXQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSAN 389
G T V QV N++P A QM+TLFG+LGKID++RL+P D PV SR+C+VK++D +
Sbjct: 30 GGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPP-DDSPLPVSSRVCFVKFHDPDS 88
Query: 390 VNVAQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGL 527
VAQH+TNTVF+DRALIV+P G IPDE KAL + + V GL
Sbjct: 89 AVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGL 134
>BC032727-1|AAH32727.1| 246|Homo sapiens SFRS11 protein protein.
Length = 246
Score = 122 bits (295), Expect = 2e-27
Identities = 58/106 (54%), Positives = 75/106 (70%)
Frame = +3
Query: 210 GXTXVXQVXNIAPQAXKXQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSAN 389
G T V QV N++P A QM+TLFG+LGKID++RL+P D PV SR+C+VK++D +
Sbjct: 30 GGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPP-DDSPLPVSSRVCFVKFHDPDS 88
Query: 390 VNVAQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGL 527
VAQH+TNTVF+DRALIV+P G IPDE KAL + + V GL
Sbjct: 89 AVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGL 134
>BC017359-1|AAH17359.1| 394|Homo sapiens SFRS11 protein protein.
Length = 394
Score = 122 bits (295), Expect = 2e-27
Identities = 58/106 (54%), Positives = 75/106 (70%)
Frame = +3
Query: 210 GXTXVXQVXNIAPQAXKXQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSAN 389
G T V QV N++P A QM+TLFG+LGKID++RL+P D PV SR+C+VK++D +
Sbjct: 30 GGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPP-DDSPLPVSSRVCFVKFHDPDS 88
Query: 390 VNVAQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGL 527
VAQH+TNTVF+DRALIV+P G IPDE KAL + + V GL
Sbjct: 89 AVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGL 134
>BC009840-1|AAH09840.1| 247|Homo sapiens SFRS11 protein protein.
Length = 247
Score = 122 bits (295), Expect = 2e-27
Identities = 58/106 (54%), Positives = 75/106 (70%)
Frame = +3
Query: 210 GXTXVXQVXNIAPQAXKXQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSAN 389
G T V QV N++P A QM+TLFG+LGKID++RL+P D PV SR+C+VK++D +
Sbjct: 30 GGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPP-DDSPLPVSSRVCFVKFHDPDS 88
Query: 390 VNVAQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGL 527
VAQH+TNTVF+DRALIV+P G IPDE KAL + + V GL
Sbjct: 89 AVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGL 134
>BC002784-1|AAH02784.1| 321|Homo sapiens SFRS11 protein protein.
Length = 321
Score = 122 bits (295), Expect = 2e-27
Identities = 58/106 (54%), Positives = 75/106 (70%)
Frame = +3
Query: 210 GXTXVXQVXNIAPQAXKXQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSAN 389
G T V QV N++P A QM+TLFG+LGKID++RL+P D PV SR+C+VK++D +
Sbjct: 30 GGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPP-DDSPLPVSSRVCFVKFHDPDS 88
Query: 390 VNVAQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGL 527
VAQH+TNTVF+DRALIV+P G IPDE KAL + + V GL
Sbjct: 89 AVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGL 134
>AL353771-6|CAI22335.1| 484|Homo sapiens splicing factor,
arginine/serine-rich 11 protein.
Length = 484
Score = 122 bits (295), Expect = 2e-27
Identities = 58/106 (54%), Positives = 75/106 (70%)
Frame = +3
Query: 210 GXTXVXQVXNIAPQAXKXQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSAN 389
G T V QV N++P A QM+TLFG+LGKID++RL+P D PV SR+C+VK++D +
Sbjct: 30 GGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPP-DDSPLPVSSRVCFVKFHDPDS 88
Query: 390 VNVAQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGL 527
VAQH+TNTVF+DRALIV+P G IPDE KAL + + V GL
Sbjct: 89 AVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGL 134
>AL353771-5|CAI22334.1| 483|Homo sapiens splicing factor,
arginine/serine-rich 11 protein.
Length = 483
Score = 122 bits (295), Expect = 2e-27
Identities = 58/106 (54%), Positives = 75/106 (70%)
Frame = +3
Query: 210 GXTXVXQVXNIAPQAXKXQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSAN 389
G T V QV N++P A QM+TLFG+LGKID++RL+P D PV SR+C+VK++D +
Sbjct: 30 GGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPP-DDSPLPVSSRVCFVKFHDPDS 88
Query: 390 VNVAQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGL 527
VAQH+TNTVF+DRALIV+P G IPDE KAL + + V GL
Sbjct: 89 AVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGL 134
>AL353771-4|CAI22333.1| 389|Homo sapiens splicing factor,
arginine/serine-rich 11 protein.
Length = 389
Score = 122 bits (295), Expect = 2e-27
Identities = 58/106 (54%), Positives = 75/106 (70%)
Frame = +3
Query: 210 GXTXVXQVXNIAPQAXKXQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSAN 389
G T V QV N++P A QM+TLFG+LGKID++RL+P D PV SR+C+VK++D +
Sbjct: 30 GGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPP-DDSPLPVSSRVCFVKFHDPDS 88
Query: 390 VNVAQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGL 527
VAQH+TNTVF+DRALIV+P G IPDE KAL + + V GL
Sbjct: 89 AVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGL 134
>BC112343-1|AAI12344.1| 508|Homo sapiens SFRS12 protein protein.
Length = 508
Score = 82.2 bits (194), Expect = 4e-15
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +3
Query: 609 DANLTAAGXXXXXXXXXXXDSRKIEEIRRTVLVADTGS--LTSQQLIDHFCQAGEVKYMR 782
D N+ G D KI+EIRRTV V + S T+ QL++ F Q GEVK++R
Sbjct: 38 DPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVR 97
Query: 783 FCSRDVDTLKYALIEMTEQEAVIKALHLNGSTLDGQTIQVYHATQSICKPXTKSNEAAQR 962
+ ++A +E +Q +V +AL NG + +++ H+ +I KP + +AA +
Sbjct: 98 MAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAK 157
Query: 963 EIXXAMCXVKXAQN 1004
E+ M V+ AQ+
Sbjct: 158 ELEEVMKRVREAQS 171
>BC067770-1|AAH67770.1| 508|Homo sapiens splicing factor,
arginine/serine-rich 12 protein.
Length = 508
Score = 82.2 bits (194), Expect = 4e-15
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +3
Query: 609 DANLTAAGXXXXXXXXXXXDSRKIEEIRRTVLVADTGS--LTSQQLIDHFCQAGEVKYMR 782
D N+ G D KI+EIRRTV V + S T+ QL++ F Q GEVK++R
Sbjct: 38 DPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVR 97
Query: 783 FCSRDVDTLKYALIEMTEQEAVIKALHLNGSTLDGQTIQVYHATQSICKPXTKSNEAAQR 962
+ ++A +E +Q +V +AL NG + +++ H+ +I KP + +AA +
Sbjct: 98 MAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAK 157
Query: 963 EIXXAMCXVKXAQN 1004
E+ M V+ AQ+
Sbjct: 158 ELEEVMKRVREAQS 171
>AF459094-1|AAL67778.1| 508|Homo sapiens splicing factor,
arginine/serine-rich 12 protein.
Length = 508
Score = 82.2 bits (194), Expect = 4e-15
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +3
Query: 609 DANLTAAGXXXXXXXXXXXDSRKIEEIRRTVLVADTGS--LTSQQLIDHFCQAGEVKYMR 782
D N+ G D KI+EIRRTV V + S T+ QL++ F Q GEVK++R
Sbjct: 38 DPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVR 97
Query: 783 FCSRDVDTLKYALIEMTEQEAVIKALHLNGSTLDGQTIQVYHATQSICKPXTKSNEAAQR 962
+ ++A +E +Q +V +AL NG + +++ H+ +I KP + +AA +
Sbjct: 98 MAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAK 157
Query: 963 EIXXAMCXVKXAQN 1004
E+ M V+ AQ+
Sbjct: 158 ELEEVMKRVREAQS 171
>U28686-1|AAB17212.1| 157|Homo sapiens RNPL protein.
Length = 157
Score = 31.1 bits (67), Expect = 8.8
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 732 QQLIDHFCQAGEVKYMRFCSRDVDTLK---YALIEMTEQEAVIKALH-LNGSTLDGQTIQ 899
Q L DHF G + + +D +T + + I T E A+ +NG +LDG+ I+
Sbjct: 20 QALEDHFSSFGPISEV-VVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIR 78
Query: 900 VYHATQS 920
V HA +S
Sbjct: 79 VDHAGKS 85
>BC006825-1|AAH06825.1| 157|Homo sapiens RNA binding motif (RNP1,
RRM) protein 3 protein.
Length = 157
Score = 31.1 bits (67), Expect = 8.8
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 732 QQLIDHFCQAGEVKYMRFCSRDVDTLK---YALIEMTEQEAVIKALH-LNGSTLDGQTIQ 899
Q L DHF G + + +D +T + + I T E A+ +NG +LDG+ I+
Sbjct: 20 QALEDHFSSFGPISEV-VVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIR 78
Query: 900 VYHATQS 920
V HA +S
Sbjct: 79 VDHAGKS 85
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,016,338
Number of Sequences: 237096
Number of extensions: 2766156
Number of successful extensions: 8517
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8500
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17890024750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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