Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D07.2
         (1304 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q95US6 Cluster: Transposase; n=1; Ceratitis rosa|Rep: T...    75   5e-12
UniRef50_Q9F287 Cluster: YapF protein; n=10; Yersinia|Rep: YapF ...    35   5.3  

>UniRef50_Q95US6 Cluster: Transposase; n=1; Ceratitis rosa|Rep:
           Transposase - Ceratitis rosa (Natal fruit fly)
          Length = 361

 Score = 74.5 bits (175), Expect = 5e-12
 Identities = 37/67 (55%), Positives = 47/67 (70%)
 Frame = +3

Query: 75  PLFFRRCARRSHATVNIDQYRTMITNFLCPRIDGMDLANMWFQQDGATFHTERETLNLLD 254
           P FF+  A ++  TVN  +YR MITNFL P+++ MD+ +MWFQQDGAT HT  ET+ LL 
Sbjct: 209 PYFFQNEAGQA-VTVNGVRYREMITNFLWPQLEDMDVDDMWFQQDGATCHTANETMALLR 267

Query: 255 EKFEGFV 275
            KF G V
Sbjct: 268 NKFNGRV 274



 Score = 48.0 bits (109), Expect = 5e-04
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
 Frame = +2

Query: 278 SRGGDINWPPRSCEL*SM--------------QTNQSIRALKADITHALCEIESYLCKDF 415
           SR GD+NWPPRSC+L  +                  + + LK +I   +  IE+ LC   
Sbjct: 276 SRNGDVNWPPRSCDLTPLDFFLWGYLKEKVYVDKPATTQELKDEIIRHINGIETPLCLSV 335

Query: 416 IQN*STRIHHLQRSGGGHLPEIIFHT 493
           I+N   R+   +R  G HL +I+ HT
Sbjct: 336 IENLDHRMEVCRRGRGAHLADILLHT 361


>UniRef50_Q9F287 Cluster: YapF protein; n=10; Yersinia|Rep: YapF
           protein - Yersinia pestis
          Length = 761

 Score = 34.7 bits (76), Expect = 5.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 183 LANMWFQQDGATFHTERETLNLLDEKFEGFVTHVVAISTGHR 308
           L ++W Q+DG T  +  +  +L+D ++  +  H VA+  G R
Sbjct: 626 LTHIWQQRDGYTVSSNNKNYDLIDTRYSSYSDHAVALHAGVR 667


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 796,196,010
Number of Sequences: 1657284
Number of extensions: 15155679
Number of successful extensions: 37923
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37070
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 134034067229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)