Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D04.2
         (1237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...   226   6e-60
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    28   3.1  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    28   3.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   5.4  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    27   7.1  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   9.4  

>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score =  226 bits (552), Expect = 6e-60
 Identities = 104/169 (61%), Positives = 134/169 (79%)
 Frame = +1

Query: 487 EALLPDMANSYRLLLTGLGEDPERAGLLKTPERAAKAMLFFTKGYDQSLEEVLNNAIFDE 666
           E  +  ++N+   +L  LGEDPER GLL TPER AKAML+FTKGY+Q+L EV+N A+F E
Sbjct: 49  EEKVKKISNAISTILECLGEDPERQGLLGTPERYAKAMLYFTKGYEQNLTEVINEAVFQE 108

Query: 667 DTDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPQGKILGLSKLARIVEIFSRRLQVQER 846
           D +EMV+V+DI++FS+CEHHLVPF GK+ IGY+P+ ++LGLSKLARI  +FSRRLQVQER
Sbjct: 109 DHEEMVIVRDIDVFSLCEHHLVPFIGKIHIGYIPRKRVLGLSKLARIANMFSRRLQVQER 168

Query: 847 LTKQIAIAVTQAVRPAGVAVVIEGVHMCMVMRGVXXINSKTVXSTMLGV 993
           LTKQ+A A+   ++P GVAVV+E  HMCMVMRGV    S TV S++ G+
Sbjct: 169 LTKQVAQAIQAVLKPQGVAVVMEATHMCMVMRGVEKPGSSTVTSSLTGI 217


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 741 RKGLHRVPATRKNSGSQQTGQD-RGNILPPSSGTRTSDE 854
           +K +HR    RK  GSQ    + +GNI    SG R  +E
Sbjct: 233 QKTIHRYTTRRKQGGSQGAADNTKGNIHSAGSGLRRYNE 271


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +1

Query: 313 VGKYKKAPEALKSFNLADAE-SELEVPGTPMTPRTSTTPGHENCTFHHDLELDHRPPTRE 489
           +GK     +  K   + +A+  ++    +P    +    GH    FHH++ +   P    
Sbjct: 212 IGKPYIKVDPKKVIGIVEADYGDITCANSPQDETSQAIAGHLVDFFHHEVSVGRLPKNLH 271

Query: 490 ALLPDMANSYRLLLTGLGEDP 552
            L   + N    ++ GL   P
Sbjct: 272 PLQSGIGNIANAIIGGLAHSP 292


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
 Frame = +2

Query: 407  RGLRPRLV-TRTAPSTMTWNWTTDRPPGRRCYRTWLTHTGFYSPAW---GRTLKGQGS*R 574
            RG+RP  + T   P+   W      P      RT   +TG  +PAW    +T       R
Sbjct: 794  RGIRPGSISTADGPNVPNWAQGARTPAVANGSRTPAWNTGSRTPAWNSGSKTPAWNSGSR 853

Query: 575  RP--NVPPKLCSSSRKDTTKAWKRF*TTPS-SMKTRTRWWS 688
             P  N   K  + +    T AW     TP+ ++  +T  W+
Sbjct: 854  TPAWNSGNKTPAWNAGSRTPAWNSGNKTPAWNVGNKTPAWN 894



 Score = 26.2 bits (55), Expect = 9.4
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
 Frame = +2

Query: 437  TAPSTMTWNWTTDRPPGRRCYRTWLTHTGFYSPAW---GRTLKGQGS*RRP--NVPPKLC 601
            T   T  WN  +  P      RT   ++G  +PAW    RT       + P  NV  K  
Sbjct: 832  TGSRTPAWNSGSKTPAWNSGSRTPAWNSGNKTPAWNAGSRTPAWNSGNKTPAWNVGNKTP 891

Query: 602  SSSRKDTTKAWKRF*TTPS-SMKTRTRWWS 688
            + +    T AW     TPS +  T+T  W+
Sbjct: 892  AWNSGAKTPAWNAGNKTPSWNNGTKTPAWN 921


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 672 RVFIEDGVVQNLFQALVVSFREEEHSFGGTFGR 574
           R  I    V  +FQ+++ ++R+  HSF G  GR
Sbjct: 110 RAQISKTSVSQIFQSMIHNYRDLWHSFKGMCGR 142


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 301  KGSFVGKYKKAPEALKSFNLADAESELEVPGTPMTPRTSTT 423
            K S   K KKA  ++K  +  D + +  +PG+  TP+ S+T
Sbjct: 1384 KASAKNKGKKA-SSVKKQSPEDDDDDFIIPGSSSTPKASST 1423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,800,340
Number of Sequences: 5004
Number of extensions: 77110
Number of successful extensions: 230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)