Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_D03.2
(1307 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 208 2e-52
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 126 2e-27
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 95 4e-18
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 75 3e-12
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 69 4e-10
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 62 2e-08
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 60 2e-07
UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11; ... 60 2e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 56 3e-06
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 56 3e-06
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 46 0.002
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 43 0.020
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 42 0.035
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 39 0.25
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 38 0.43
UniRef50_A4LA78 Cluster: Putative uncharacterized protein; n=1; ... 38 0.57
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 38 0.57
UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4; ... 35 5.4
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 208 bits (509), Expect = 2e-52
Identities = 96/107 (89%), Positives = 97/107 (90%)
Frame = +2
Query: 527 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 706
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 707 CRLPDTCPPFSLREAWRFLIAHAVXISVRCRSFAPSWAVCTNPPFQP 847
CRLPDTCPPFSLREAWRFLIAHAV ISVRCRSFAPSWAVCTNPPF P
Sbjct: 62 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSP 108
Score = 41.5 bits (93), Expect = 0.047
Identities = 28/61 (45%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 717 RIPVRLSPFGKRGAFS*LTLXVSQFGVG-RSLQAGLCART-PRFSPXXAPYPVTIVLSPT 890
R+P PF R A+ L V RS T P FSP APYPVTIVLSPT
Sbjct: 63 RLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPT 122
Query: 891 R 893
R
Sbjct: 123 R 123
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 126 bits (303), Expect = 2e-27
Identities = 72/116 (62%), Positives = 77/116 (66%)
Frame = +2
Query: 371 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQEXTCEQKASKRPGTVK 550
+C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE---I 77
Query: 551 RPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 718
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFPL APSCALLF P LP
Sbjct: 78 RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 95.1 bits (226), Expect = 4e-18
Identities = 45/54 (83%), Positives = 47/54 (87%)
Frame = +2
Query: 545 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 706
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF P
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 75.4 bits (177), Expect = 3e-12
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1
Query: 685 VRSPVPTLPLTGYLSAFLPSGSVALSHSSRCXYLSSV 795
+RSPVPTLPLTGYLSAFLPSGSVALSHSSRC YLSSV
Sbjct: 1 MRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 37
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 68.5 bits (160), Expect = 4e-10
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = -2
Query: 841 KRGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESARGSFQG 668
+RGVRA+SPAWSERP P+ DT SVSYEKAPRFPKG++ + +G Q R + +G
Sbjct: 25 ERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQV---SGKRQGRNRRAHEG 79
Score = 48.8 bits (111), Expect = 3e-04
Identities = 25/40 (62%), Positives = 27/40 (67%)
Frame = -3
Query: 738 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT 619
+K QVSGKRQGRNRRAHEGA+ K SL PPLT
Sbjct: 60 KKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99
Score = 44.8 bits (101), Expect = 0.005
Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = -1
Query: 902 RXLPGWTQDDSYRIRRXXRAETGGSCTQPSLERTTYTELRYXQREL*ESATLPEGRKADR 723
R PGWTQDDSYR R RAE G P+ ++ P+G+KA++
Sbjct: 5 RVRPGWTQDDSYRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQ 64
Query: 722 YPVSG-RVGTGERTRE-LPGGNAWYLYSPVG 636
VSG R G R E G + SPVG
Sbjct: 65 --VSGKRQGRNRRAHEGAAGEKSPASLSPVG 93
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 62.5 bits (145), Expect = 2e-08
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = -2
Query: 535 PFAGLLLTCXFLRYPLILWITVLPPLSELIPLAAAERP 422
P LLTC F YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 59.7 bits (138), Expect = 2e-07
Identities = 34/76 (44%), Positives = 36/76 (47%)
Frame = +2
Query: 620 VRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVXISVRCR 799
VR GETRQD K P P PPFSL + + IS RCR
Sbjct: 23 VRSGETRQDLKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCR 82
Query: 800 SFAPSWAVCTNPPFQP 847
SFAPSWAV NPPF P
Sbjct: 83 SFAPSWAVSKNPPFSP 98
Score = 56.4 bits (130), Expect = 2e-06
Identities = 39/86 (45%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +3
Query: 648 IKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGAFS*LTLXVSQFGVG---RSLQAG 818
+KI VS LP ALSCS+PA RIPV PF G+ + S G+ RS
Sbjct: 32 LKIITVSDESLPLALSCSNPAVSRIPV--PPFSLAGSVA--LSHSSHSGISARCRSFAPS 87
Query: 819 LC-ARTPRFSPXXAPYPVTIVLSPTR 893
++ P FSP APYPVT+ LSPTR
Sbjct: 88 WAVSKNPPFSPTAAPYPVTVHLSPTR 113
>UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11;
cellular organisms|Rep: Uncharacterized 9.4 kDa protein
- Escherichia coli
Length = 84
Score = 59.7 bits (138), Expect = 2e-07
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 833 PPFQPXRCALSGNYRLESNPVXXXLSPLAXATG 931
PP QP RCALSGNYRLESNPV LSPLA ATG
Sbjct: 4 PPVQPDRCALSGNYRLESNPVRHDLSPLAAATG 36
Score = 50.4 bits (115), Expect = 1e-04
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +3
Query: 933 NRIXKXRYVGGATXFLXWWXNXGXXKKTVXGYLXPAEXXYLRKKIGXS 1076
NRI + RYVGGAT FL WW N G ++TV G + K++G S
Sbjct: 37 NRISRARYVGGATEFLKWWPNYGYTRRTVFGICALLKPVTFGKRVGSS 84
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 55.6 bits (128), Expect = 3e-06
Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 335 CINESANARGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 502
CI + A AR AV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 55.6 bits (128), Expect = 3e-06
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +2
Query: 434 CGERYQLTQRR*YG--YPQNQGITQEXTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 607
C R Q R G +P+N I + + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 608 IDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 706
I Q + +T+ +YK T FPL++PS +LLF P
Sbjct: 82 IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 46.4 bits (105), Expect = 0.002
Identities = 23/38 (60%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -1
Query: 908 IXRXLPGWTQDDSYRIRRXXRAETGGSCTQPS-LERTT 798
+ R LPGWTQDDSYRIRR RAE G P+ ER T
Sbjct: 3 LRRALPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPT 40
Score = 43.6 bits (98), Expect = 0.012
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = -2
Query: 841 KRGVRAHSPAWSERPTPN 788
+RGVRAHSPAWSERPTPN
Sbjct: 25 ERGVRAHSPAWSERPTPN 42
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 42.7 bits (96), Expect = 0.020
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +3
Query: 138 DPDMIRYIDEFGQTTTXMQ 194
DPDMIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 41.9 bits (94), Expect = 0.035
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +1
Query: 454 HSKAVIRLSTESGDNAGXNM 513
HSKAVIRLSTESGDNAG NM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 39.1 bits (87), Expect = 0.25
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -2
Query: 841 KRGVRAHSPAWSERPTPN*DT 779
+RGV A+SPAWSERPTP+ DT
Sbjct: 25 ERGVLAYSPAWSERPTPSRDT 45
Score = 38.3 bits (85), Expect = 0.43
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 902 RXLPGWTQDDSYRIRRXXRAETGGSCTQPS-LERTT 798
R PGWTQ +SYRIRR RAE G P+ ER T
Sbjct: 5 RAFPGWTQVNSYRIRRSSRAERGVLAYSPAWSERPT 40
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 38.3 bits (85), Expect = 0.43
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 333 SALMNRPTRGXRRFAYW 383
+ALMNRPTRG RRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_A4LA78 Cluster: Putative uncharacterized protein; n=1;
Edwardsiella tarda|Rep: Putative uncharacterized protein
- Edwardsiella tarda
Length = 99
Score = 37.9 bits (84), Expect = 0.57
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 810 QAGLCARTPRFSPXXAPYPVTIVLSPTR*XTXYXHW 917
QAG C +P FSP P VT++L+PT T HW
Sbjct: 64 QAGFCTNSP-FSPTITPVQVTVLLNPTLTDTQKRHW 98
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 37.9 bits (84), Expect = 0.57
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -3
Query: 405 ERGSGRAPNTQTAXPRALADSLMQ 334
+R + APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 668)
Length = 755
Score = 34.7 bits (76), Expect = 5.4
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -3
Query: 765 MRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 661
+R+R A RR GG+ G+R+GRNR+ + RG+R
Sbjct: 355 VRRRAAPRRRHGGEWRGRRRGRNRKRRQ--QRGQR 387
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 915,179,028
Number of Sequences: 1657284
Number of extensions: 17512335
Number of successful extensions: 44894
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 42515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44856
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 134439003988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -