Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D02.2
         (1212 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    24   2.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          24   2.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   6.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   6.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   6.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   6.1  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 698 EAWRFLIAHAVGISVRCRSFA-PSWAVCTNPPFQPDRCALSGNYRLESNPVRHDLSPLAA 874
           +A  F I+   GI+ +   ++ P+W+    P F+P +  +S +      P      P  A
Sbjct: 25  QALGFKISDNSGINSQMIDYSRPNWSYLRTPQFEPQQFEVSLSENRSHEPEME--RPKGA 82

Query: 875 ATGNRISXA 901
           + G R   A
Sbjct: 83  SNGKRARTA 91


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 698 EAWRFLIAHAVGISVRCRSFA-PSWAVCTNPPFQPDRCALSGNYRLESNPVRHDLSPLAA 874
           +A  F I+   GI+ +   ++ P+W+    P F+P +  +S +      P      P  A
Sbjct: 45  QALGFKISDNSGINSQMIDYSRPNWSYLRTPQFEPQQFEVSLSENRSHEPEME--RPKGA 102

Query: 875 ATGNRISXA 901
           + G R   A
Sbjct: 103 SNGKRARTA 111


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 878 WLLPVAISRVLPGWTQD 828
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 878 WLLPVAISRVLPGWTQD 828
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 878 WLLPVAISRVLPGWTQD 828
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 878 WLLPVAISRVLPGWTQD 828
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,736
Number of Sequences: 336
Number of extensions: 4138
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35349784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)