Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C24.2
         (1249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.083
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.33 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    29   1.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   2.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   3.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   3.1  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   4.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   7.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 513 PPKXXPXXPXXGGFFXXXKXPPPPPPXXKKK 421
           PP   P  P   GF    + PPPPPP   KK
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 32.7 bits (71), Expect = 0.11
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 511 PXXXPPXPXGXGXFXXXKXPPPPPPXXEKKXK 416
           P   PP P   G     + PPPPPP   KK K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 454 PPPPPPXXEKKXKPP 410
           PPPPPP  E   +PP
Sbjct: 11  PPPPPPGFEPPSQPP 25



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 945 PPXXGXPPPPXXXNPPXXFFXXPPPPXXXK 856
           PP    PPPP     P      PPPP   K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 620 PPFXGXPXXPPXGGXNPXPPPXXXGPGF 537
           PP    P  PP G   P  PP    PG+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGY 32


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -1

Query: 946 PPPFXGXPPPPXXKPPXXXFXXPPPSP 866
           P P  G PPPP   P       PPP P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 30.3 bits (65), Expect = 0.58
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -1

Query: 574 TPPPPPXPXAXXFXXGGGGXAPXXXPPXPXGXGXFXXXKXPPPPPP 437
           TP P P P        GG       PP P   G       PPPPPP
Sbjct: 743 TPAPAPIPVPPPAPIMGG------PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 18/55 (32%), Positives = 18/55 (32%)
 Frame = -1

Query: 601 PFXPXXGGXTPPPPPXPXAXXFXXGGGGXAPXXXPPXPXGXGXFXXXKXPPPPPP 437
           P  P  GG  PPPPP   A      G G  P   PP     G        P   P
Sbjct: 753 PPAPIMGGPPPPPPPPGVA------GAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = -1

Query: 565 PPPXPXAXXFXXGGGGXAPXXXPPXPXGXGXFXXXKXPPPPPPXXEKKXKPP 410
           PPP P A           P   PP P   G       PPPPPP       PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP-PPAPIMGGP-----PPPPPPPGVAGAGPPP 777



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 509 GGPXPXPPXKXXGPGXXGGGXGXPPP 586
           GGP P PP     PG  G G   PPP
Sbjct: 759 GGPPPPPPP----PGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = -3

Query: 617 PFXGXPXXPPXGGXNPXPPPXXXGPGFFXGGXGXGPXXXXPXPP 486
           P    P  P  GG  P PPP    PG      G GP    P PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP----PGV----AGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = -1

Query: 946 PPP---FXGXPPPPXXKPPXXXFXXPPPSP 866
           PPP     G PPPP   PP      PPP P
Sbjct: 752 PPPAPIMGGPPPPP--PPPGVAGAGPPPPP 779


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
 Frame = -1

Query: 574 TPPPPPXPXAXXFXXGGGGXAPXXXPPXPXGXGXFXXXKX--PPPPPPXXEKKXKPP 410
           +PP P  P +           P   P            K   PPPPPP    + KPP
Sbjct: 270 SPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +2

Query: 497 GXXXGGPXPXPPXKXXGPGXXGGGXGXPPPXGGKXXSXKKGG 622
           G   G   P PP    GPG   GG     P G +      GG
Sbjct: 68  GITEGNAAPPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGG 109


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 583 GGXTPPPPPXPXAXXFXXGGGGXAP 509
           GG  PPPPP P +  F       AP
Sbjct: 303 GGLPPPPPPPPPSNDFWKDSNEPAP 327


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 24.2 bits (50), Expect(2) = 3.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 454  PPPPPPXXEKKXKPPFXXXFFF 389
            PPPPPP  E + K  +   + F
Sbjct: 1096 PPPPPPPAEVEKKDLYLALYDF 1117



 Score = 21.8 bits (44), Expect(2) = 3.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 571  PPPPPXPXA 545
            PPPPP P A
Sbjct: 1095 PPPPPPPPA 1103


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/55 (27%), Positives = 16/55 (29%)
 Frame = -1

Query: 574  TPPPPPXPXAXXFXXGGGGXAPXXXPPXPXGXGXFXXXKXPPPPPPXXEKKXKPP 410
            T PP P P +          AP   PP P           P   PP       PP
Sbjct: 1039 TAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/54 (25%), Positives = 16/54 (29%)
 Frame = -1

Query: 571 PPPPPXPXAXXFXXGGGGXAPXXXPPXPXGXGXFXXXKXPPPPPPXXEKKXKPP 410
           PP P  P       GG   AP    P     G         P  P  + K + P
Sbjct: 108 PPKPAIPKGKVLSLGGNTSAPKSTKPISISLGGTKAPTTTKPAAPAAQSKTETP 161


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = +2

Query: 440 GGGGGXFXXXKXPPXXGXXGXXXGGPXPXPPXKXXGPGXXGGGXG 574
           GG GG           G  G   GG    P     GPG  GGG G
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG 252


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -1

Query: 946  PPPFXGXPPPPXXKP-PXXXFXXPPP 872
            PPP    PPPP   P P      PPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 945  PPXXGXPPPPXXXNPPXXFFXXPPPP 868
            PP    PPPP     P      PPPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.150    0.487 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,754
Number of Sequences: 5004
Number of extensions: 40307
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)