Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C23.2
         (1288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...   152   9e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...   152   9e-38
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    82   1e-16
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    82   1e-16
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    82   1e-16
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    55   2e-08
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    29   1.8  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    29   1.8  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    27   7.4  

>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  152 bits (369), Expect = 9e-38
 Identities = 75/123 (60%), Positives = 88/123 (71%)
 Frame = +1

Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGGAKXRKXXXY 336
           V+++IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ  STLHLVLRLRGG K RK   Y
Sbjct: 26  VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTY 85

Query: 337 STPKXXXXXXXXXXLAVLRFYKVDENGKXHRLRRECTGEQCGAGVFMAVMEDRHYCGKCH 516
           +TPK          LAVL++YKV+++G   RLRREC    CGA  FMA  +DR YCG+CH
Sbjct: 86  TTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCH 143

Query: 517 STM 525
            T+
Sbjct: 144 LTL 146


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  152 bits (369), Expect = 9e-38
 Identities = 75/123 (60%), Positives = 88/123 (71%)
 Frame = +1

Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGGAKXRKXXXY 336
           V+++IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ  STLHLVLRLRGG K RK   Y
Sbjct: 26  VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTY 85

Query: 337 STPKXXXXXXXXXXLAVLRFYKVDENGKXHRLRRECTGEQCGAGVFMAVMEDRHYCGKCH 516
           +TPK          LAVL++YKV+++G   RLRREC    CGA  FMA  +DR YCG+CH
Sbjct: 86  TTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCH 143

Query: 517 STM 525
            T+
Sbjct: 144 LTL 146


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +1

Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
           V+++IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ  STLHLVLRLRGG
Sbjct: 26  VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +1

Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
           V+++IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ  STLHLVLRLRGG
Sbjct: 26  VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +1

Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
           V+++IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ  STLHLVLRLRGG
Sbjct: 26  VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76



 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +1

Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
           V+++IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ  STLHLVLRLRGG
Sbjct: 102 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +1

Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
           V+++IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ  STLHLVLRLRGG
Sbjct: 178 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +1

Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
           V+++IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ  STLHLVLRLRGG
Sbjct: 254 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +1

Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
           V+++IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ  STLHLVLRLRGG
Sbjct: 330 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 23/52 (44%), Positives = 36/52 (69%)
 Frame = +1

Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGGA 312
           ++ +++ K GIPP+QQRL +AGKQ+   +     +++  S LHLVL LRGG+
Sbjct: 26  IKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 181 AGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRL 300
           A I   +QRL +AG+ L+   +L    IQ   ++HLV  L
Sbjct: 37  ADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 603 NPSYTAVASVPYRLEGTYLFVVVFEDHRAVTLPAV 499
           NP+YT      Y L  TYL    F++HR  +  AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 385 VLRFY-KVDENGKXHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 543
           V+R Y ++ +N +     R C  E      F  V++D H   KC + ++    D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,354
Number of Sequences: 5004
Number of extensions: 27461
Number of successful extensions: 51
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)