Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_C23.2
(1288 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 128 1e-29
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 128 1e-29
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 83 3e-16
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 83 3e-16
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 83 3e-16
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 83 3e-16
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 83 3e-16
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 58 1e-08
Z46933-1|CAA87034.1| 142|Caenorhabditis elegans Hypothetical pr... 44 2e-04
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 44 2e-04
Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical pr... 42 7e-04
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 33 0.58
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu... 29 9.4
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu... 29 9.4
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein. 29 9.4
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 128 bits (308), Expect = 1e-29
Identities = 61/124 (49%), Positives = 80/124 (64%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGGAKXRKXXXY 336
++ +I+A GIP +QRL +AG+QLE SD I +T+++ L L GGAK RK Y
Sbjct: 24 IKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSEATIYVNLELLGGAKKRKKKVY 79
Query: 337 STPKXXXXXXXXXXLAVLRFYKVDENGKXHRLRRECTGEQCGAGVFMAVMEDRHYCGKCH 516
+TPK LAVL++YK+DENGK RLR+EC CG GVFMA +RHYCG+CH
Sbjct: 80 TTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCH 139
Query: 517 STMV 528
T+V
Sbjct: 140 DTLV 143
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 128 bits (308), Expect = 1e-29
Identities = 61/124 (49%), Positives = 80/124 (64%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGGAKXRKXXXY 336
++ +I+A GIP +QRL +AG+QLE SD I +T+++ L L GGAK RK Y
Sbjct: 24 IKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSEATIYVNLELLGGAKKRKKKVY 79
Query: 337 STPKXXXXXXXXXXLAVLRFYKVDENGKXHRLRRECTGEQCGAGVFMAVMEDRHYCGKCH 516
+TPK LAVL++YK+DENGK RLR+EC CG GVFMA +RHYCG+CH
Sbjct: 80 TTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCH 139
Query: 517 STMV 528
T+V
Sbjct: 140 DTLV 143
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 102 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 178 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 254 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 330 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 406 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 36.3 bits (80), Expect = 0.047
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAG 222
V+A+IQ K GIPP+QQRL FAG
Sbjct: 482 VKAKIQDKEGIPPDQQRLIFAG 503
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 102 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 178 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 254 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 330 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 406 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 482 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 558 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 634 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 710 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 786 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 836
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 102 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 178 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 254 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 330 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 406 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 482 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 558 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 634 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 710 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 786 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKQSTLHLVLRLRGG 836
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 83.4 bits (197), Expect = 3e-16
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
V+A+IQ K GIPP+QQRL FAGKQLE GRTLSD NIQ STLHLVLRLRGG
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 58.4 bits (135), Expect = 1e-08
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGG 309
++ +++ K GIPP QQRL FAGKQ+ +T +D + S LHLVL LRGG
Sbjct: 26 IKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76
>Z46933-1|CAA87034.1| 142|Caenorhabditis elegans Hypothetical
protein F34H10.1 protein.
Length = 142
Score = 44.4 bits (100), Expect = 2e-04
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 250 SDSNIQXXSTLHLVLRLRGGAKXRKXXXYSTPKXXXXXXXXXXLAVLRFYKVDENGKXHR 429
SD I+ +T+++ L GGAK RK Y+ PK +++K+DENGK R
Sbjct: 52 SDCGIKAAATIYVNCELLGGAKKRKKKVYTIPKKNNISQRKSSSPSPKYFKIDENGKISR 111
Query: 430 L 432
L
Sbjct: 112 L 112
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 44.4 bits (100), Expect = 2e-04
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +1
Query: 166 QIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLR 303
++Q K G+PP+QQRL F QLE R L NI+ +HLV R R
Sbjct: 189 KVQNKHGVPPDQQRLIFGRAQLENDRALFAYNIRDEDIIHLVSRHR 234
>Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical
protein K08C9.7 protein.
Length = 154
Score = 42.3 bits (95), Expect = 7e-04
Identities = 27/78 (34%), Positives = 39/78 (50%)
Frame = +1
Query: 199 QQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLRLRGGAKXRKXXXYSTPKXXXXXXXXXX 378
+QRL +A AG+ D I+ +T+++ L GGAK RK Y PK
Sbjct: 54 EQRLCYA-----AGK--GDCGIKAAATIYVNCELLGGAKKRKKKVYIIPKKNNISQRKSS 106
Query: 379 LAVLRFYKVDENGKXHRL 432
+++K+DENGK RL
Sbjct: 107 SPSPKYFKIDENGKISRL 124
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 32.7 bits (71), Expect = 0.58
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 157 VQAQIQAKAGIPPNQQRLXFAGKQLEAGRTLSDSNIQXXSTLHLVLR 297
++ I+ + IP + L F+GK+LE ++ D NIQ ST+ + R
Sbjct: 178 IKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGDYNIQKSSTITMYFR 224
>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform b protein.
Length = 1273
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -2
Query: 633 APTLCQDFI*NPSYTAVASVPYRLEG-----TYLFVVVFEDHRAVTLPAVVTVL 487
+P L Q + P Y VAS YR++G +Y+FV+ E+ + + P+V + L
Sbjct: 571 SPDLGQTWFNIPDY--VASTEYRIKGLKPSHSYMFVIRAENEKGIGTPSVSSAL 622
>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform a protein.
Length = 1269
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -2
Query: 633 APTLCQDFI*NPSYTAVASVPYRLEG-----TYLFVVVFEDHRAVTLPAVVTVL 487
+P L Q + P Y VAS YR++G +Y+FV+ E+ + + P+V + L
Sbjct: 571 SPDLGQTWFNIPDY--VASTEYRIKGLKPSHSYMFVIRAENEKGIGTPSVSSAL 622
>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
Length = 1273
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -2
Query: 633 APTLCQDFI*NPSYTAVASVPYRLEG-----TYLFVVVFEDHRAVTLPAVVTVL 487
+P L Q + P Y VAS YR++G +Y+FV+ E+ + + P+V + L
Sbjct: 571 SPDLGQTWFNIPDY--VASTEYRIKGLKPSHSYMFVIRAENEKGIGTPSVSSAL 622
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,775
Number of Sequences: 27780
Number of extensions: 176064
Number of successful extensions: 424
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3599888010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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