Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_C21.2
(1278 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 31 0.34
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 30 0.79
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 29 1.8
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 29 1.8
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 29 1.8
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 28 3.2
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 5.6
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 26 9.7
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 31.1 bits (67), Expect = 0.34
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Frame = +3
Query: 765 YICNY--CNKKFVDRVFFKVHIKLH-------CDVCGLLFSSKLKYLQHRHKAGRIQKKH 917
Y+C + CNK+F K H+ H C +C F+ + +H I K
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGI-KAF 628
Query: 918 QCRICNESYFRYMDLKDH 971
C CN+ + R L H
Sbjct: 629 ACVTCNQRFARMDALNRH 646
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 29.9 bits (64), Expect = 0.79
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 22/147 (14%)
Frame = +3
Query: 546 CEKSYPTEKKLLKHQDKKH--MIVYERPKKRVSFSDHV-----IVHEVKEYH--KCRKCP 698
CE + T++KL H ++ H +I Y P + + + + ++E H C C
Sbjct: 151 CELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVPSCSICG 210
Query: 699 KIFK---EYXXXXXXXXXXXXXXXCYICNY--CNKKFVDRVFFKVHIKL--------HCD 839
+ FK Y C C K F K HI + HCD
Sbjct: 211 RQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCD 270
Query: 840 VCGLLFSSKLKYLQHRHKAGRIQKKHQ 920
CG F K LQ + G +K H+
Sbjct: 271 SCGTKFGYK-HMLQRHLERGTCKKAHK 296
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Frame = +3
Query: 765 YICNY--CNKKFVDRVFFKVHIKLHCDV---------CGLLFSSKLKYLQHRHKAGRIQK 911
++C+Y C+K F + K+H + H +V C F ++ ++L+ + R K
Sbjct: 53 FVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQ-QHLERHIEVHRKPK 111
Query: 912 KHQC--RICNESYFRYMDLKDH 971
+ C C+E + ++ L+ H
Sbjct: 112 PYACTWEGCDECFSKHQQLRSH 133
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +3
Query: 780 CNKKFVDRVFFKVHIKLHCDVCGLLFSSKLKYLQHR---HKAGRIQKKHQCRICNESY 944
C+ D++ ++ +HC CG +F + Q + H + CR+C E Y
Sbjct: 140 CHDPMCDKLLNFINGHIHCRKCGYIFCNFHSMYQIKLSIHATYDSENGFWCRVCRECY 197
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 534 KCNICEKSYPTEKKLLKHQDKKHMIVYERPKKRVSFS 644
+ N K+Y E KLL+ Q+KK +++ + K+R ++
Sbjct: 446 RLNPALKNYMEELKLLEQQNKKRLLLVSQEKERKGYT 482
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 459 ENTKQVDDTSSSDTENEMVDPKMAVKCNICEKSYPTEKKLLKHQ 590
EN+ V TE ++D K C+ C K + + L +H+
Sbjct: 7 ENSTNVLSAKRKLTEPSLIDSKRVFPCDQCAKRFTRHENLTRHK 50
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 483 TSSSDTENEMVDPKMAVKCNICEKSYPTEKKL 578
TSS D + + ++ KC++CE+ TE+ L
Sbjct: 776 TSSEDMAKQTSNENISPKCSVCEEYIDTERLL 807
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +3
Query: 405 CCVLLQREDFLLFRNATRENTKQVDDTSSSDTENEMVDPKMAVKCNICEKSYPTEKKL 578
C + R++ L + EN V S + +EM+ K C++C+ EK++
Sbjct: 247 CENITSRDESFLDLSIDIENHTSVTSCLRSFSASEMLSSKNKFHCDVCKSLQEAEKRM 304
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 840 VCGLLFSSKLKYLQHRHKAG 899
+CGL + L LQH H+AG
Sbjct: 211 ICGLTNDNNLYILQHSHQAG 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,919,920
Number of Sequences: 5004
Number of extensions: 77450
Number of successful extensions: 287
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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