Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C21.2
         (1278 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    45   1e-06
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    37   3e-04
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      29   0.066
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   1.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   3.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   4.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   10.0 

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 45.2 bits (102), Expect = 1e-06
 Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
 Frame = +3

Query: 468 KQVDDTSSSDTENEM--VDPKMAVKCNICEKSYP--------TEKKLLKHQDKKH--MIV 611
           KQ+ ++++   +NE+  V+P   VK  +C             +E  L   ++K +  ++ 
Sbjct: 8   KQITNSTTMSVKNEISTVEPVDPVKSLVCSPDLSVFTSPACGSETPLTNIEEKTYQCLLC 67

Query: 612 YERPKKRVSFSDHVIVH--EVKEYHKCRKCPKIFKEYXXXXXXXXXXXXXXXCYICNYCN 785
            +   ++  +  H+  H  E ++ ++C  C K F                   Y C YC+
Sbjct: 68  QKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFA-VPARLTRHYRTHTGEKPYQCEYCS 126

Query: 786 KKFVDRVFFKVHIKLH-------CDVCGLLFSSKLKYLQHRH-KAGRIQKKHQCRICNES 941
           K F  +    VH ++H       CDVC   F    K   HRH +    ++ H+C +C+++
Sbjct: 127 KSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKL--HRHMRIHTGERPHKCTVCSKT 184

Query: 942 YFRYMDLKDHSLEH 983
           + +   L  H   H
Sbjct: 185 FIQSGQLVIHMRTH 198



 Score = 29.9 bits (64), Expect = 0.050
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
 Frame = +3

Query: 534 KCNICEKSYPTEKKLLKHQDK---KHMIVYERPKKRVSFSD----HVIVHEVKEYHKCRK 692
           KC +C K++    +L+ H      +   V +   K  + S     H   H  ++ + C  
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDI 236

Query: 693 CPKIFKEYXXXXXXXXXXXXXXXCYICNYCNKKFVDRVFFKVHIKLHCD 839
           C K F  Y                Y C  C++ F  +   ++HIK H D
Sbjct: 237 CGKSFG-YNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSD 284


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 37.1 bits (82), Expect = 3e-04
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +3

Query: 765 YICNYCNKKFVDRVFFKVHIKLH-----CDVCGLLFSSKLKYLQHRHKAGRIQKKHQCRI 929
           + C YC K +V     K+HI+ H     C +CG  F S+   LQ   +    +K   C+ 
Sbjct: 17  FSCKYCEKVYVSLGALKMHIRTHTLPCKCHLCGKAF-SRPWLLQGHIRTHTGEKPFSCQH 75

Query: 930 CNESY 944
           CN ++
Sbjct: 76  CNRAF 80


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 29.5 bits (63), Expect = 0.066
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 834 CDVCGLLFSSKLKYLQHRHKAG-RIQKKHQCRICNESYFRYMDLKDH-SLEHLR 989
           CDVCG   S+KL   +H+ +   +      C +C++ +     L +H S+ H R
Sbjct: 374 CDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYHRR 427



 Score = 27.9 bits (59), Expect = 0.20
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +3

Query: 489 SSDTENEMVDPKMAVKCNICEKSYPTEKKLLKHQDKKH 602
           S      ++ P +   C++C K+  T+  L +H++++H
Sbjct: 358 SHPLHGNLLPPGVCYTCDVCGKTLSTKLTLKRHKEQQH 395



 Score = 22.2 bits (45), Expect = 10.0
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 762 CYICNYCNKKFVDRVFFKVH 821
           CY C+ C K    ++  K H
Sbjct: 371 CYTCDVCGKTLSTKLTLKRH 390


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 765 YICNYCNKKFVDRVFFKVHIKLH 833
           Y C++C+++FV     + H+++H
Sbjct: 38  YHCSHCDRQFVQVANLRRHLRVH 60



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
 Frame = +3

Query: 771 CNYCNKKFVDRVFFKVHIKL-------HCDVCGLLFSSKLKYLQH-RHKAGRIQKKHQCR 926
           C  C+K+F      K H++L       HC  C   F       +H R   G  ++ + C 
Sbjct: 12  CPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTG--ERPYACE 69

Query: 927 IC 932
           +C
Sbjct: 70  LC 71


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 501 ENEMVDPKMAVKCNICEKSYPTEKKLLKHQDKKH 602
           +N    P     CNIC++ Y +   L  H+   H
Sbjct: 23  QNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYH 56


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
 Frame = +3

Query: 666 VKEYHKCRKCPKIFK-EYXXXXXXXXXXXXXXXCYICNYCNKKFVDRVFFKVHIKL-HCD 839
           + E  +C  C + F   Y                Y+C +CN+++  +     H  L H  
Sbjct: 2   INEPQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRG 61

Query: 840 VCGLL 854
             G+L
Sbjct: 62  SSGML 66


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 13/64 (20%), Positives = 26/64 (40%)
 Frame = -3

Query: 484 VSSTCFVFSRVAFLNNRKSSRCNNTQHKLVILFSCSFLTLLPSDFTLFIRFKYNSMSFLA 305
           +S    V+ R          +C  T+H   ++FS +    LP    +F  +K    + + 
Sbjct: 177 ISFPAIVWWRAVRTEEVPEDKCPFTEHLGYLIFSSTISFYLPLFVMVFTYYKIYRAAVIQ 236

Query: 304 TSTM 293
           T ++
Sbjct: 237 TKSL 240


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 914  TPMQNMQRIIFPVHGPQRSQ 973
            TP  NMQ  I+P+ G ++S+
Sbjct: 1013 TPKGNMQWKIWPMKGEEKSR 1032


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,485
Number of Sequences: 438
Number of extensions: 5305
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43822995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)