Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_C20.2
(1285 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q16RI6 Cluster: Rnase h; n=2; Culicini|Rep: Rnase h - A... 122 3e-26
UniRef50_UPI00003C0619 Cluster: PREDICTED: similar to CG14801-PB... 120 1e-25
UniRef50_Q8IX06 Cluster: Exonuclease GOR; n=21; Homo/Pan/Gorilla... 104 4e-21
UniRef50_A1L0Y1 Cluster: LOC100036702 protein; n=2; Xenopus trop... 98 4e-19
UniRef50_UPI0000F2CB48 Cluster: PREDICTED: similar to transcript... 98 5e-19
UniRef50_Q569U5 Cluster: LOC733188 protein; n=2; Xenopus|Rep: LO... 94 8e-18
UniRef50_Q8N1G1 Cluster: RNA exonuclease 1 homolog; n=39; cellul... 91 8e-17
UniRef50_UPI00005A2516 Cluster: PREDICTED: similar to transcript... 90 1e-16
UniRef50_UPI00001E338C Cluster: PREDICTED: similar to REX1, RNA ... 88 4e-16
UniRef50_Q4SF45 Cluster: Chromosome 1 SCAF14609, whole genome sh... 69 2e-15
UniRef50_Q8T023 Cluster: LD38414p; n=7; Sophophora|Rep: LD38414p... 84 9e-15
UniRef50_Q17F53 Cluster: Rnase h; n=1; Aedes aegypti|Rep: Rnase ... 68 6e-10
UniRef50_Q9VB01 Cluster: CG12877-PA, isoform A; n=8; Diptera|Rep... 63 1e-08
UniRef50_Q5BXI2 Cluster: SJCHGC01934 protein; n=1; Schistosoma j... 56 1e-06
UniRef50_UPI0000D8B54B Cluster: UPI0000D8B54B related cluster; n... 54 6e-06
UniRef50_Q0UC06 Cluster: Putative uncharacterized protein; n=1; ... 50 1e-04
UniRef50_Q9U220 Cluster: Putative uncharacterized protein; n=3; ... 48 7e-04
UniRef50_Q5AL29 Cluster: RNA exonuclease 3; n=3; Saccharomycetal... 47 0.001
UniRef50_Q9P7H2 Cluster: RNA exonuclease 3; n=1; Schizosaccharom... 45 0.005
UniRef50_Q2GYE5 Cluster: Putative uncharacterized protein; n=4; ... 44 0.006
UniRef50_A3GHV0 Cluster: Predicted protein; n=2; Pichia|Rep: Pre... 43 0.020
UniRef50_Q5KL74 Cluster: 3'-5' exonuclease, putative; n=1; Filob... 40 0.14
UniRef50_Q10124 Cluster: Putative RNA exonuclease pqe-1; n=8; Ca... 39 0.24
UniRef50_Q017E2 Cluster: Exonuclease family protein; n=2; Ostreo... 37 1.3
UniRef50_A7S0U8 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 36 1.7
UniRef50_Q4SMK5 Cluster: Chromosome 18 SCAF14547, whole genome s... 36 2.3
UniRef50_A2QDR9 Cluster: Remark: mutants exhibit RNase MRP RNA p... 36 3.0
UniRef50_Q4SIY9 Cluster: Chromosome 21 SCAF14577, whole genome s... 34 9.1
UniRef50_A4BRT1 Cluster: Putative uncharacterized protein; n=1; ... 34 9.1
>UniRef50_Q16RI6 Cluster: Rnase h; n=2; Culicini|Rep: Rnase h -
Aedes aegypti (Yellowfever mosquito)
Length = 254
Score = 122 bits (293), Expect = 3e-26
Identities = 58/125 (46%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Frame = +2
Query: 584 EHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVS-----SDSR--YACCKSMLGSRGCSVA 742
E C RC K F +T DGEY+ +E C+YHWGR++ S+ + Y+CC +GC++
Sbjct: 8 ERECCRCGKGFFITLDGEYLTQEHCIYHWGRMTRVYAGSEFKKVYSCCNGETDVKGCTIN 67
Query: 743 RSHVWSGTRPGMNGPLEGYVRAR-SPRG-GVYAIDTEMCYTTXGLELASIXVIAADGRLV 916
+ HVW+G G NGP +G+V+ SPR GVYA+D EM YT GLEL + V+A DG LV
Sbjct: 68 KLHVWTGLLSGFNGPFDGFVKTEPSPRNEGVYALDCEMSYTGRGLELTKVTVVAVDGSLV 127
Query: 917 YRSXV 931
Y V
Sbjct: 128 YEKLV 132
>UniRef50_UPI00003C0619 Cluster: PREDICTED: similar to CG14801-PB,
isoform B; n=1; Apis mellifera|Rep: PREDICTED: similar
to CG14801-PB, isoform B - Apis mellifera
Length = 709
Score = 120 bits (288), Expect = 1e-25
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 14/135 (10%)
Frame = +2
Query: 569 EADAVEHLCVRCDKMFRMTR-DGEYVKEETCLYHWGRVSSD------SRYACCKSMLGSR 727
E A+E C RC K F + R DGEY+ EE C++HWG++ S + CC+S SR
Sbjct: 449 ELMAIERKCARCHKSFYVNREDGEYLYEEKCVHHWGKLRSGLGGAHCDLWECCRSRETSR 508
Query: 728 GCSVARSHVWSGTRPGMNGPLEGYVRARSPRG-------GVYAIDTEMCYTTXGLELASI 886
GC+ A HVW+G PG NGP + YVR + + GVY ID EMC+T GLEL +
Sbjct: 509 GCTTADFHVWTGAVPGYNGPFDDYVRTKLAQTVPQDGNYGVYGIDCEMCFTRRGLELVKV 568
Query: 887 XVIAADGRLVYRSXV 931
V+ DGR+VY + V
Sbjct: 569 TVVDMDGRVVYDTLV 583
>UniRef50_Q8IX06 Cluster: Exonuclease GOR; n=21; Homo/Pan/Gorilla
group|Rep: Exonuclease GOR - Homo sapiens (Human)
Length = 318
Score = 104 bits (250), Expect = 4e-21
Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Frame = +2
Query: 575 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSSD-------SRYACCKSMLGSRGC 733
D+ +C RC + ++ G V+++ C YHWGRV S S+Y CC + GS GC
Sbjct: 51 DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGC 110
Query: 734 SVARSHVWSGTRPGMNGPLEGYVR--ARSPRGGVYAIDTEMCYTTXGLELASIXVIAADG 907
VA+ HV G + ++G +E + + +R G+YA+D EMCYTT GLEL + V+ AD
Sbjct: 111 QVAKQHVRDGRKESLDGFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADM 170
Query: 908 RLVYRSXV 931
R+VY + V
Sbjct: 171 RVVYDTFV 178
>UniRef50_A1L0Y1 Cluster: LOC100036702 protein; n=2; Xenopus
tropicalis|Rep: LOC100036702 protein - Xenopus tropicalis
(Western clawed frog) (Silurana tropicalis)
Length = 1026
Score = 98.3 bits (234), Expect = 4e-19
Identities = 42/128 (32%), Positives = 78/128 (60%), Gaps = 9/128 (7%)
Frame = +2
Query: 575 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRV-------SSDSRYACCKSMLGSRGC 733
D + +C RC + + +T G++ ++E C YH G+V ++RY+CC++++GS GC
Sbjct: 772 DVLRRVCCRCGETYSITMQGKHTRKEECNYHSGKVLRHRVPGGIETRYSCCEAVVGSPGC 831
Query: 734 SVARSHVWSGTRPGMNGPLEGYVRARSPRG--GVYAIDTEMCYTTXGLELASIXVIAADG 907
+A+ HV G + ++G ++ +++ G G++++D EMCYTT GLEL + V+
Sbjct: 832 QIAKLHVHDGQKENLDGFIKTFIKLPPSDGNSGIFSVDCEMCYTTCGLELTRVSVVDPSL 891
Query: 908 RLVYRSXV 931
++VY + V
Sbjct: 892 QVVYETFV 899
>UniRef50_UPI0000F2CB48 Cluster: PREDICTED: similar to transcription
elongation factor B polypeptide 3 binding protein 1; n=2;
Amniota|Rep: PREDICTED: similar to transcription
elongation factor B polypeptide 3 binding protein 1 -
Monodelphis domestica
Length = 1259
Score = 97.9 bits (233), Expect = 5e-19
Identities = 46/135 (34%), Positives = 77/135 (57%), Gaps = 9/135 (6%)
Frame = +2
Query: 554 SDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSS-------DSRYACCKS 712
++ + D+ +C RC + ++ G +++E C +HWGR+ +++Y+CC
Sbjct: 998 TEEKKTTDSSCRICCRCGTEYLVSPTGNCIRKEECCHHWGRLRRQRVAGGWETQYSCCSG 1057
Query: 713 MLGSRGCSVARSHVWSGTRPGMNGPLEGYVRARSPRG--GVYAIDTEMCYTTXGLELASI 886
+GS GC VA+ HV G + + G ++ + + S G G+YA+D EMCYT GLEL I
Sbjct: 1058 AVGSAGCQVAKQHVQDGRKDNLEGFVKTFEKLPSTDGYPGIYALDCEMCYTKQGLELTRI 1117
Query: 887 XVIAADGRLVYRSXV 931
VI +D ++VY + V
Sbjct: 1118 TVINSDLKVVYDTFV 1132
>UniRef50_Q569U5 Cluster: LOC733188 protein; n=2; Xenopus|Rep:
LOC733188 protein - Xenopus laevis (African clawed frog)
Length = 1143
Score = 93.9 bits (223), Expect = 8e-18
Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 9/135 (6%)
Frame = +2
Query: 554 SDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSS-------DSRYACCKS 712
++ +D+ +C RC + ++ G V+ E C+YHWGR+ ++ Y CC
Sbjct: 882 TEEKRSSDSSCRVCCRCGAEYLVSTSGNCVRREECIYHWGRLRRQRVHGGWETHYNCCSG 941
Query: 713 MLGSRGCSVARSHVWSGTRPGMNGPLEGYVRAR--SPRGGVYAIDTEMCYTTXGLELASI 886
+GS GC A+ HV+ G + ++G ++ + +++ G++A+D EM YTT GLEL +
Sbjct: 942 AVGSTGCQTAKQHVYDGRKENLDGYVKTFEKSQPVDSNPGIFALDCEMSYTTQGLELTRV 1001
Query: 887 XVIAADGRLVYRSXV 931
VI ++ ++VY + V
Sbjct: 1002 TVINSELKVVYDTFV 1016
>UniRef50_Q8N1G1 Cluster: RNA exonuclease 1 homolog; n=39; cellular
organisms|Rep: RNA exonuclease 1 homolog - Homo sapiens
(Human)
Length = 1221
Score = 90.6 bits (215), Expect = 8e-17
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEETCLYHWGRVSS-------DSRYACCKSMLGSRGCSVARSH 751
C RC + ++ G +++E C YHWGR+ +++Y CC + GS GC VA+ H
Sbjct: 973 CCRCGTEYLVSSSGRCIRDEECYYHWGRLRRNRVAGGWETQYMCCSAAAGSVGCQVAKQH 1032
Query: 752 VWSGTRPGMNGPLEGYVRARS--PRGGVYAIDTEMCYTTXGLELASIXVIAADGRLVYRS 925
V G + + G ++ + + S G+YA+D EM YTT GLEL + V+ D +VY +
Sbjct: 1033 VQDGRKERLEGFVKTFEKELSGDTHPGIYALDCEMSYTTYGLELTRVTVVDTDVHVVYDT 1092
Query: 926 XV 931
V
Sbjct: 1093 FV 1094
>UniRef50_UPI00005A2516 Cluster: PREDICTED: similar to transcription
elongation factor B polypeptide 3 binding protein 1
isoform 1; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to transcription elongation factor B polypeptide
3 binding protein 1 isoform 1 - Canis familiaris
Length = 795
Score = 89.8 bits (213), Expect = 1e-16
Identities = 45/123 (36%), Positives = 74/123 (60%), Gaps = 9/123 (7%)
Frame = +2
Query: 590 LCVRCDKMFRMTRDGEYVKEETCLYHWGRVSS-------DSRYACCKSMLGSRGCSVARS 748
+C RC K++ +T G++ + E C YH+G V S ++RY+CC +LGS GC VA+
Sbjct: 554 ICCRCGKIYGVTSTGKHCRVEECNYHFGPVLSHKVLGGLETRYSCCGGVLGSAGCQVAKL 613
Query: 749 HVWSGTRPGMNGPLEGYVRARSPRG--GVYAIDTEMCYTTXGLELASIXVIAADGRLVYR 922
HV + + G ++ +V++ P G GV+A++ E+CYT GLEL + V+ ++VY
Sbjct: 614 HVHD-QKENIKGFVKTFVKSPPPDGNPGVFAVNCEVCYTAKGLELTQVTVVDPSLQVVYD 672
Query: 923 SXV 931
+ V
Sbjct: 673 TFV 675
>UniRef50_UPI00001E338C Cluster: PREDICTED: similar to REX1, RNA
exonuclease 1 homolog (S. cerevisiae); n=4; Murinae|Rep:
PREDICTED: similar to REX1, RNA exonuclease 1 homolog
(S. cerevisiae) - Mus musculus
Length = 624
Score = 88.2 bits (209), Expect = 4e-16
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Frame = +2
Query: 530 GSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSS-------D 688
G GS ++ C RC + ++ G + E C+YHWGRV S
Sbjct: 298 GRPGSAVLFSGEQLLSPTHRACCRCGTKYLVSFSGRCLCSEPCVYHWGRVVSIPVEEGWQ 357
Query: 689 SRYACCKSMLGSRGCSVARSHVWSGTRPGMNGPLEGYVRAR-SPRGGVYAIDTEMCYTTX 865
RY+CC + + + GC VA+ HV G + ++G + + + G++A+D EM YTT
Sbjct: 358 VRYSCCSAPMEATGCKVAKQHVQDGRKDNLHGFAKTFPKTDWEAHAGIFALDCEMSYTTH 417
Query: 866 GLELASIXVIAADGRLVYRSXV 931
GLEL + V+ D +VY + V
Sbjct: 418 GLELTRVTVVDTDLNVVYDTFV 439
>UniRef50_Q4SF45 Cluster: Chromosome 1 SCAF14609, whole genome shotgun
sequence; n=2; Tetraodontidae|Rep: Chromosome 1
SCAF14609, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 1342
Score = 69.3 bits (162), Expect(2) = 2e-15
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +2
Query: 686 DSRYACCKSMLGSRGCSVARSHVWSGTRPGMNGPLEGYVRARSPRG--GVYAIDTEMCYT 859
++ Y CC + +G+ GC V++ HV G + + G + + + P G GV+A+D EMCYT
Sbjct: 1132 ETSYRCCAAAVGAPGCQVSKQHVQDGRKASLEGYVATFSKDLPPDGNAGVFALDCEMCYT 1191
Query: 860 TXGLELASIXVIAADGRLVYRSXV 931
GLEL + VI ++ +++Y + V
Sbjct: 1192 KQGLELTRVTVIDSEMKVIYDTFV 1215
Score = 36.7 bits (81), Expect(2) = 2e-15
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 578 AVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSSDSRYACC 706
A +C RC +++ +G V++E C +HWG++ + C
Sbjct: 1058 AFSKICCRCGAEYKVNANGNCVRKEECSFHWGQLRRHKGPSLC 1100
>UniRef50_Q8T023 Cluster: LD38414p; n=7; Sophophora|Rep: LD38414p -
Drosophila melanogaster (Fruit fly)
Length = 787
Score = 83.8 bits (198), Expect = 9e-15
Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 13/129 (10%)
Frame = +2
Query: 593 CVRCDKMFRMTR-DGEYVKEETCLYHWGRVS------SDSRYACC-KSMLGSRGCSVARS 748
C RC + F + G+Y+ E C YH G+ S R+ CC + S GC +
Sbjct: 529 CARCKRHFLVDELTGQYLTHEECQYHSGKYQRYYDGVSHGRWTCCNEGEESSPGCCLGDR 588
Query: 749 HVWSGTRPGMNGPLEGYVRARSPRGG-----VYAIDTEMCYTTXGLELASIXVIAADGRL 913
HVWSG+ G+NGP +VR G VYA+D EM YT GL++ + ++A +G+L
Sbjct: 589 HVWSGSVVGVNGPYYDFVRTEHRGSGEDEPAVYALDCEMSYTGRGLDVTKVSLVALNGQL 648
Query: 914 VYRSXVXRV 940
VY V V
Sbjct: 649 VYEHFVRPV 657
>UniRef50_Q17F53 Cluster: Rnase h; n=1; Aedes aegypti|Rep: Rnase h -
Aedes aegypti (Yellowfever mosquito)
Length = 979
Score = 67.7 bits (158), Expect = 6e-10
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Frame = +2
Query: 503 PGSQGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYH----- 667
P S G+ + TP+ + E C RC K+F + E ++C YH
Sbjct: 708 PRSTDTPGKAKI-HTPKPSRPPNEE--ERYCSRCSKVFNL-ETYEEPAVDSCNYHAKSTC 763
Query: 668 WGRVSSDSRYACCKSMLGSRGCSVARSHVWSGTR-PGMNG------PLEGYVRARSPRGG 826
+ R +D+ ++CC+ G+ GC A HV S + G P EGYV ++
Sbjct: 764 YRRGFADNLHSCCQQPAGTAGCMYANYHVSSFVDYDDLTGFVKTMEPAEGYVPSKKD--- 820
Query: 827 VYAIDTEMCYTTXGLELASIXVIAADGRLVYRSXV 931
++A+D EMCYTT GLEL + V+ + + VY + V
Sbjct: 821 IFALDCEMCYTTGGLELTRVTVVDINEKTVYDALV 855
>UniRef50_Q9VB01 Cluster: CG12877-PA, isoform A; n=8; Diptera|Rep:
CG12877-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 1010
Score = 63.3 bits (147), Expect = 1e-08
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Frame = +2
Query: 584 EHLCVRCDKMFRMTRDGEYVKEETCLYH-----WGRVSSDSRYACCKSMLGSRGCSVARS 748
E C RC K+F + E+ + C YH + R +D ++ CC+ G+ GC+ A
Sbjct: 744 ERYCSRCGKVFSLDIY-EHQSFDMCNYHPKSTGYRRGFTDHQHRCCQQPAGTPGCTYANY 802
Query: 749 HVWSGTRPG----MNGPLEGYVRARSPRGGVYAIDTEMCYTTXGLELASIXVIAADGRLV 916
HV P +E + +YA+D EMCYTT G+EL + V+ +GR V
Sbjct: 803 HVSDYYDPEKLTCFVKTIERGEEFVPTKKDIYALDCEMCYTTHGIELTRVTVVDINGRSV 862
Query: 917 YRSXV 931
Y + V
Sbjct: 863 YDALV 867
>UniRef50_Q5BXI2 Cluster: SJCHGC01934 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC01934 protein - Schistosoma
japonicum (Blood fluke)
Length = 247
Score = 56.4 bits (130), Expect = 1e-06
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEETCLYHWGRV--------SSDSRYACCKSMLGSRGCSVA-R 745
C RC F + G + + C+YHWG+ D RY CC +G GC + +
Sbjct: 1 CCRCGTRFLVDEFGHSLTKGECIYHWGKAVKQRSFGRGFDLRYLCCDGEIGQLGCQICPK 60
Query: 746 SHVWSGTRPGMNGPLEGYVRARSPRG-------------GVYAIDTEMCYTTXGLELASI 886
HV + N EG+V P VYA+D EM YTT G ELA I
Sbjct: 61 GHVHDANKWLDN---EGFVVTLPPLPKSSNCDEDENSDCNVYALDCEMVYTTGGCELARI 117
Query: 887 XVI 895
++
Sbjct: 118 TIV 120
>UniRef50_UPI0000D8B54B Cluster: UPI0000D8B54B related cluster; n=1;
Mus musculus|Rep: UPI0000D8B54B UniRef100 entry - Mus
musculus
Length = 903
Score = 54.4 bits (125), Expect = 6e-06
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Frame = +2
Query: 686 DSRYACCKSMLGSRGCSVARSHVWSGTRPGMNGPLEGYVR--ARSPRGGVYAIDTEMCYT 859
+++Y CC S++GS GC VA+ HV G R + G + + + + GV+A+D EM YT
Sbjct: 705 ETQYMCC-SVVGSVGCQVAKQHVHDGWRENLEGFVRTFQKELPKDAHAGVFALDCEMSYT 763
Query: 860 TXGLELASIXVIAADGRLVYRSXV 931
LE+ + V+ D +++Y + V
Sbjct: 764 Y--LEVIRVTVVDTDLQVMYDTFV 785
>UniRef50_Q0UC06 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 663
Score = 50.0 bits (114), Expect = 1e-04
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Frame = +2
Query: 593 CVRCDKMF-----RMTRDGEYVKEETCLYHWGR----------VSSDSRYACCKSMLGSR 727
C RC F R DG C +HWG+ V +R +CC +GS
Sbjct: 319 CDRCATRFQVFPERREEDGALTTGGQCRHHWGKRIFPKRTKNAVPEPTRLSCCNEAVGSP 378
Query: 728 GCSVARSHVWSGTRPGMNGPLEGYVRA----RSPRGGVYAIDTEMCYTTXGLELASIXVI 895
GC +HV+ + P + +V ++P D EM YTT GLEL + VI
Sbjct: 379 GCITHETHVFKISDPKRLALVMPFVETPENDKAPPHTAVCFDCEMGYTTRGLELMRLTVI 438
Query: 896 A 898
+
Sbjct: 439 S 439
>UniRef50_Q9U220 Cluster: Putative uncharacterized protein; n=3;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 365
Score = 47.6 bits (108), Expect = 7e-04
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEETCLYH----WGRVSSDSRYACCKSMLG--SRGCSVARSHV 754
C RC K F + DG + C+YH W ++ CC + G ++GC V HV
Sbjct: 94 CSRCSKGFYLNPDGT-ANAQKCVYHHRAKWDPLTGKKHLPCCSAKPGPSTKGCLVEDRHV 152
Query: 755 WSGTRPG------MNGPLEGYVRARSPRGGVYAIDTEMCYTTXGLELASIXVIAADGRLV 916
+S + ++ +G RS + V+A+D E+ +T GLE+A + ++ G+++
Sbjct: 153 FSQSWEDTLWEFVVSPQAKGKDDHRSNK--VFALDCELVHTLNGLEVARVSLVDMKGKVL 210
>UniRef50_Q5AL29 Cluster: RNA exonuclease 3; n=3;
Saccharomycetales|Rep: RNA exonuclease 3 - Candida
albicans (Yeast)
Length = 404
Score = 46.8 bits (106), Expect = 0.001
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Frame = +2
Query: 575 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSSDSRYACCKSMLGSRGCSVARSHV 754
+ + +C RC FR+ + + + C +H G+ +Y CC S + + CS A++HV
Sbjct: 153 EKITGICNRCGTEFRLDQQLQPI---VCEFHHGK-KQRGKYICCMSNVDGQPCSKAKNHV 208
Query: 755 WSGTRPGMNGPLEGY--------VRARSPRGGVYAIDTEMCYTTXGLELASIXVI 895
+ P L Y + + V ID EM +TT G EL I I
Sbjct: 209 YLLNTPEEKQALLPYQFTKELFTTTSTKSKSRVLGIDCEMGFTTKGFELMRITAI 263
>UniRef50_Q9P7H2 Cluster: RNA exonuclease 3; n=1;
Schizosaccharomyces pombe|Rep: RNA exonuclease 3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 540
Score = 44.8 bits (101), Expect = 0.005
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Frame = +2
Query: 656 CLYHWGRVSSDSR-------YACCKSMLG-SRGCSVARSHVWSGTRPGMNGPLEGYV--- 802
C YHWG++ + + Y CC G S GC + +HV+ + +
Sbjct: 313 CTYHWGKLFREKQGGEKIRTYTCCGVKEGDSSGCIIEDNHVFKYRHLPYLASVHPFSYLP 372
Query: 803 -RARSPRGGVYAIDTEMCYTTXGLELASIXVIAAD 904
S + A+D E+CYTT G+ELA + V+A +
Sbjct: 373 DSTNSKQLSHCALDCELCYTTNGMELARLTVVAKE 407
>UniRef50_Q2GYE5 Cluster: Putative uncharacterized protein; n=4;
Pezizomycotina|Rep: Putative uncharacterized protein -
Chaetomium globosum (Soil fungus)
Length = 707
Score = 44.4 bits (100), Expect = 0.006
Identities = 40/137 (29%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Frame = +2
Query: 566 EEADAVEHLCVRCDKMF-----RMTRDGEYVKEETCLYHWGRV-----------SSDSRY 697
EEA C RC F R DG CL+H GRV RY
Sbjct: 361 EEASLGYESCDRCRTNFQVFPGRREEDGALTSGGKCLHHPGRVYYPERTMGDFDKPARRY 420
Query: 698 ACCKSMLG-SRGCSVARSHVWSGTRPGMNGPLEGYVRAR----SPRGGVYAIDTEMCYTT 862
CC ++G S GC +HV+ T P L + +P+ D EM YT
Sbjct: 421 RCCHQVVGESAGCVSGGTHVFKTTSPARLASLIPFAETPPNPLAPKDRAVCFDCEMGYTV 480
Query: 863 XGLELASIXVIA-ADGR 910
G+EL + + DG+
Sbjct: 481 RGMELIRLTATSWPDGK 497
>UniRef50_A3GHV0 Cluster: Predicted protein; n=2; Pichia|Rep:
Predicted protein - Pichia stipitis (Yeast)
Length = 369
Score = 42.7 bits (96), Expect = 0.020
Identities = 39/113 (34%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEETCLYHWGRVSSDSR---YACCKS--MLG-SRGCSVARSHV 754
C RC F TRD + + + C YH GRV Y CC+S LG + C+V+ HV
Sbjct: 126 CHRCGAEF--TRDEQLLPVQ-CQYHAGRVRKTDFGRVYECCQSEVSLGDTHPCTVSNMHV 182
Query: 755 --WSGTRP-GMNGPLEGYVRA-RSPRGGVYAI--DTEMCYTTXGLELASIXVI 895
W + P + R +G ++AI D EM YTT GLEL + +
Sbjct: 183 FYWQNKEEMEWSIPFQNTDRLFGESKGSLFAIGIDCEMGYTTRGLELLRVTAV 235
>UniRef50_Q5KL74 Cluster: 3'-5' exonuclease, putative; n=1;
Filobasidiella neoformans|Rep: 3'-5' exonuclease,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 532
Score = 39.9 bits (89), Expect = 0.14
Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 21/155 (13%)
Frame = +2
Query: 506 GSQGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSS 685
G SG G G + D E + H C RC F ++ + C YH+GR +
Sbjct: 245 GYPDPSGEGLTGRGVETKPDGEGET--HDCDRCKVSFIVSSKNLERRFGECRYHYGRTAP 302
Query: 686 DS-------RYACCKSMLGSRGC--------------SVARSHVWSGTRPGMNGPLEGYV 802
+ Y+CC G +GC +A+ + R +
Sbjct: 303 ERVEGRRKWIYSCCGKERGEQGCEEGVHVFKDGEDDKELAKRVAYKTVRMCLEEAKASGK 362
Query: 803 RARSPRGGVYAIDTEMCYTTXGLELASIXVIAADG 907
GV A+D EM +TT GL L + V+ +G
Sbjct: 363 NVVGEGYGVVAMDCEMIFTTAGLSLGRVTVVDENG 397
>UniRef50_Q10124 Cluster: Putative RNA exonuclease pqe-1; n=8;
Caenorhabditis|Rep: Putative RNA exonuclease pqe-1 -
Caenorhabditis elegans
Length = 1647
Score = 39.1 bits (87), Expect = 0.24
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 745
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 1388 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 1447
Query: 746 SHVW-----SGTRPGMNGPLEGYVRARSPRGGVYAIDTEMCYTTXGLELASIXVI 895
HV ++ P+ RS R VYA+D EM YT G LA + ++
Sbjct: 1448 VHVTDQLFKKELSTFVSTPVPVPNDQRSTR--VYALDCEMVYTIAGPALARLTMV 1500
>UniRef50_Q017E2 Cluster: Exonuclease family protein; n=2;
Ostreococcus|Rep: Exonuclease family protein -
Ostreococcus tauri
Length = 404
Score = 36.7 bits (81), Expect = 1.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 833 AIDTEMCYTTXGLELASIXVIAADGRLVYRSXV 931
A+D E CYT GL+L + V+ DG +VY V
Sbjct: 243 ALDCEFCYTAEGLQLTRVSVVKEDGDVVYDKLV 275
>UniRef50_A7S0U8 Cluster: Predicted protein; n=2; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 126
Score = 36.3 bits (80), Expect = 1.7
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 827 VYAIDTEMCYTTXGLELASIXVIAADGRLVYRSXV 931
++AID EMC T+ GLEL + V+ D L+Y + V
Sbjct: 1 MFAIDCEMCTTSEGLELTRVSVVEEDCTLLYDTFV 35
>UniRef50_Q4SMK5 Cluster: Chromosome 18 SCAF14547, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 18
SCAF14547, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 270
Score = 35.9 bits (79), Expect = 2.3
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 827 VYAIDTEMCYTTXGLELASIXVIAADGR 910
++ +D EMC+T GLELA + ++ +DGR
Sbjct: 110 LFGLDCEMCWTEKGLELARVSLVDSDGR 137
>UniRef50_A2QDR9 Cluster: Remark: mutants exhibit RNase MRP RNA
processing defect; n=5; Eurotiomycetidae|Rep: Remark:
mutants exhibit RNase MRP RNA processing defect -
Aspergillus niger
Length = 656
Score = 35.5 bits (78), Expect = 3.0
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +2
Query: 686 DSRYACCKSMLG-SRGCSVARSHVWSGTRPG-MNGPLEGYVRARSPRGG---VYAIDTEM 850
D+ ++CC +G S GC+ ++HV+ + + L+ P G D EM
Sbjct: 372 DAYFSCCNESVGTSAGCTKGKTHVFKVSETKRLASVLQFQKTPEQPEKGRLPPVCFDCEM 431
Query: 851 CYTTXGLELASIXVIA 898
YTT GLEL + ++
Sbjct: 432 GYTTLGLELIRLTAVS 447
>UniRef50_Q4SIY9 Cluster: Chromosome 21 SCAF14577, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 21 SCAF14577, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 613
Score = 33.9 bits (74), Expect = 9.1
Identities = 21/83 (25%), Positives = 30/83 (36%)
Frame = +2
Query: 524 GRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSSDSRYAC 703
GRG L T S+ D EA + C CD + M + L H+ S R
Sbjct: 400 GRGRLSGTDASNCDAEAVVTSYNCQLCDFRYSMAHSANVIVVAPLLLHYQHNHSIHRCCI 459
Query: 704 CKSMLGSRGCSVARSHVWSGTRP 772
M +G + H+ + P
Sbjct: 460 QHCMYCPQGLCQPQKHLGEVSHP 482
>UniRef50_A4BRT1 Cluster: Putative uncharacterized protein; n=1;
Nitrococcus mobilis Nb-231|Rep: Putative uncharacterized
protein - Nitrococcus mobilis Nb-231
Length = 1004
Score = 33.9 bits (74), Expect = 9.1
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Frame = +2
Query: 410 NRIRLKRSYT*IHRLDLXPMTTWDVNAPEFVPGSQGD--SGRGSLGSTPRSDSDEEADAV 583
N L+ ++ + RL P + +NA FVPG +GD GR S + SD DA+
Sbjct: 191 NMYDLEMAHDLLSRLFRIPNLIY-INANRFVPGWEGDFKKGRPENISLTHAYSDLFTDAL 249
Query: 584 EHLCVRCDKMFRMTRDGEYVKEETC-LYHWGRVSSDSRYACCKSMLGSRGCSVARSHV-W 757
+ D + + ++D VK TC H R SD Y L + V ++V W
Sbjct: 250 SGVAKVID-LRKWSKD--EVKAYTCDNIHVTRAGSDYIYEEIMRALDMQAAEVPATNVSW 306
Query: 758 SGTRPGMNGPLEG 796
S +N + G
Sbjct: 307 SDANAKLNAAITG 319
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 903,023,319
Number of Sequences: 1657284
Number of extensions: 17411782
Number of successful extensions: 40670
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 38914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40609
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 131199509916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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