Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C20.2
         (1285 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   4.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   4.9  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   4.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   4.9  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   8.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 515 GDSGRGSLGSTPRSDSDEE 571
           GD G+GS  +    D DEE
Sbjct: 186 GDDGQGSSTNNDEDDDDEE 204


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 515 GDSGRGSLGSTPRSDSDEE 571
           GD G+GS  +    D DEE
Sbjct: 186 GDDGQGSSTNNDEDDDDEE 204


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 591 CVYVVIKCLE*LVMVNTLKKKHASIIGA 674
           CV  ++   E L ++N +KK+++++I +
Sbjct: 347 CVNTLVSEQEGLQLINEMKKRYSALINS 374


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 515 GDSGRGSLGSTPRSDSDEE 571
           GD G+GS  +    D DEE
Sbjct: 186 GDDGQGSSTNNDEDDDDEE 204


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 608 KMFRMTRDGEYVKEETCLY 664
           K+  M+RD  Y+   TCL+
Sbjct: 487 KVLAMSRDQNYLYRMTCLF 505


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,424
Number of Sequences: 336
Number of extensions: 4293
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 37816048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)