Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C20.2
         (1285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    45   3e-05
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    29   1.8  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    27   4.2  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   5.6  

>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
 Frame = +2

Query: 656 CLYHWGRVSSDSR-------YACCKSMLG-SRGCSVARSHVWSGTRPGMNGPLEGYV--- 802
           C YHWG++  + +       Y CC    G S GC +  +HV+          +  +    
Sbjct: 313 CTYHWGKLFREKQGGEKIRTYTCCGVKEGDSSGCIIEDNHVFKYRHLPYLASVHPFSYLP 372

Query: 803 -RARSPRGGVYAIDTEMCYTTXGLELASIXVIAAD 904
               S +    A+D E+CYTT G+ELA + V+A +
Sbjct: 373 DSTNSKQLSHCALDCELCYTTNGMELARLTVVAKE 407


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 827 VYAIDTEMCYTTXGLELASIXVIAADGRLVYRSXV 931
           + AID EM  T  GLE+A + ++     ++Y   V
Sbjct: 268 ILAIDCEMVRTENGLEIARVTIVDMKSEVIYDEFV 302


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 572 ADAVEHLCVRCDKMFRMTRD 631
           A+A+EH CVRC +   MT+D
Sbjct: 366 ANALEHACVRCVEKGIMTKD 385


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 507 PGTNSGAFTSHVVIGXRSRRWIYVYDRFSR 418
           P TNS  F S    G   RRW+Y+ D   R
Sbjct: 828 PSTNSKDFRSEA--GIPERRWLYISDNIVR 855


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,624,130
Number of Sequences: 5004
Number of extensions: 67686
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)