Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C20.2
         (1285 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447...    33   0.37 
01_04_0066 - 15654796-15655098,15655268-15655392,15657249-156576...    29   6.0  

>12_01_0552 +
           4469009-4469080,4470052-4470117,4470808-4470941,
           4471073-4471179,4471695-4471802,4471879-4471949,
           4472126-4472185,4472264-4472319,4472663-4472723,
           4472809-4473076,4473174-4473355,4473444-4473736,
           4474048-4474138
          Length = 522

 Score = 33.5 bits (73), Expect = 0.37
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +2

Query: 773 GMNGPLEGYVRARS-PRGG----VYAIDTEMCYTTXGLELASIXVIAADGRLV 916
           G N  LEG+V   S P G     + A+D EMC T  G EL  + ++   G +V
Sbjct: 156 GYNFSLEGFVPTVSAPPGSSPYAILALDCEMCVTAAGFELTRVTLVDIKGEVV 208


>01_04_0066 -
           15654796-15655098,15655268-15655392,15657249-15657603,
           15658236-15658405,15659404-15659608
          Length = 385

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 543 DPKDPRPLSPWDPGTNSGAFTSHVVIGXRSRRWIYVYD 430
           DP D   + P DPG +S +F SH  +  ++R+ ++  D
Sbjct: 294 DPNDNSTVVPMDPG-SSVSFDSHYFVNLKARQGMFTSD 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,310,349
Number of Sequences: 37544
Number of extensions: 515039
Number of successful extensions: 1250
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3992400636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)