Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C20.2
         (1285 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113453-1|AAI13454.2|  318|Homo sapiens REXO1L1 protein protein.     104   6e-22
BC112074-1|AAI12075.1|  347|Homo sapiens REXO1L2P protein protein.    104   6e-22
AF495523-1|AAN77012.1|  318|Homo sapiens exonuclease GOR protein.     104   6e-22
BC032244-1|AAH32244.1| 1221|Homo sapiens REX1, RNA exonuclease 1...    91   1e-17
AB032964-1|BAA86452.1| 1239|Homo sapiens KIAA1138 protein protein.     91   1e-17

>BC113453-1|AAI13454.2|  318|Homo sapiens REXO1L1 protein protein.
          Length = 318

 Score =  104 bits (250), Expect = 6e-22
 Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
 Frame = +2

Query: 575 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSSD-------SRYACCKSMLGSRGC 733
           D+   +C RC   + ++  G  V+++ C YHWGRV S        S+Y CC +  GS GC
Sbjct: 51  DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGC 110

Query: 734 SVARSHVWSGTRPGMNGPLEGYVR--ARSPRGGVYAIDTEMCYTTXGLELASIXVIAADG 907
            VA+ HV  G +  ++G +E + +  +R    G+YA+D EMCYTT GLEL  + V+ AD 
Sbjct: 111 QVAKQHVRDGRKESLDGFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADM 170

Query: 908 RLVYRSXV 931
           R+VY + V
Sbjct: 171 RVVYDTFV 178


>BC112074-1|AAI12075.1|  347|Homo sapiens REXO1L2P protein protein.
          Length = 347

 Score =  104 bits (250), Expect = 6e-22
 Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
 Frame = +2

Query: 575 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSSD-------SRYACCKSMLGSRGC 733
           D+   +C RC   + ++  G  V+++ C YHWGRV S        S+Y CC +  GS GC
Sbjct: 80  DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGC 139

Query: 734 SVARSHVWSGTRPGMNGPLEGYVR--ARSPRGGVYAIDTEMCYTTXGLELASIXVIAADG 907
            VA+ HV  G +  ++G +E + +  +R    G+YA+D EMCYTT GLEL  + V+ AD 
Sbjct: 140 QVAKQHVRDGRKESLDGFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADM 199

Query: 908 RLVYRSXV 931
           R+VY + V
Sbjct: 200 RVVYDTFV 207


>AF495523-1|AAN77012.1|  318|Homo sapiens exonuclease GOR protein.
          Length = 318

 Score =  104 bits (250), Expect = 6e-22
 Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
 Frame = +2

Query: 575 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSSD-------SRYACCKSMLGSRGC 733
           D+   +C RC   + ++  G  V+++ C YHWGRV S        S+Y CC +  GS GC
Sbjct: 51  DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGC 110

Query: 734 SVARSHVWSGTRPGMNGPLEGYVR--ARSPRGGVYAIDTEMCYTTXGLELASIXVIAADG 907
            VA+ HV  G +  ++G +E + +  +R    G+YA+D EMCYTT GLEL  + V+ AD 
Sbjct: 111 QVAKQHVRDGRKESLDGFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADM 170

Query: 908 RLVYRSXV 931
           R+VY + V
Sbjct: 171 RVVYDTFV 178


>BC032244-1|AAH32244.1| 1221|Homo sapiens REX1, RNA exonuclease 1
            homolog (S. cerevisiae) protein.
          Length = 1221

 Score = 90.6 bits (215), Expect = 1e-17
 Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
 Frame = +2

Query: 593  CVRCDKMFRMTRDGEYVKEETCLYHWGRVSS-------DSRYACCKSMLGSRGCSVARSH 751
            C RC   + ++  G  +++E C YHWGR+         +++Y CC +  GS GC VA+ H
Sbjct: 973  CCRCGTEYLVSSSGRCIRDEECYYHWGRLRRNRVAGGWETQYMCCSAAAGSVGCQVAKQH 1032

Query: 752  VWSGTRPGMNGPLEGYVRARS--PRGGVYAIDTEMCYTTXGLELASIXVIAADGRLVYRS 925
            V  G +  + G ++ + +  S     G+YA+D EM YTT GLEL  + V+  D  +VY +
Sbjct: 1033 VQDGRKERLEGFVKTFEKELSGDTHPGIYALDCEMSYTTYGLELTRVTVVDTDVHVVYDT 1092

Query: 926  XV 931
             V
Sbjct: 1093 FV 1094


>AB032964-1|BAA86452.1| 1239|Homo sapiens KIAA1138 protein protein.
          Length = 1239

 Score = 90.6 bits (215), Expect = 1e-17
 Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
 Frame = +2

Query: 593  CVRCDKMFRMTRDGEYVKEETCLYHWGRVSS-------DSRYACCKSMLGSRGCSVARSH 751
            C RC   + ++  G  +++E C YHWGR+         +++Y CC +  GS GC VA+ H
Sbjct: 991  CCRCGTEYLVSSSGRCIRDEECYYHWGRLRRNRVAGGWETQYMCCSAAAGSVGCQVAKQH 1050

Query: 752  VWSGTRPGMNGPLEGYVRARS--PRGGVYAIDTEMCYTTXGLELASIXVIAADGRLVYRS 925
            V  G +  + G ++ + +  S     G+YA+D EM YTT GLEL  + V+  D  +VY +
Sbjct: 1051 VQDGRKERLEGFVKTFEKELSGDTHPGIYALDCEMSYTTYGLELTRVTVVDTDVHVVYDT 1110

Query: 926  XV 931
             V
Sbjct: 1111 FV 1112


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,490,973
Number of Sequences: 237096
Number of extensions: 2784664
Number of successful extensions: 9549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9537
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18440487050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)