Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_C20.2
(1285 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-27|CAB60521.1| 365|Caenorhabditis elegans Hypothetical... 48 2e-05
AC006620-4|AAF39778.1| 305|Caenorhabditis elegans Hypothetical ... 48 2e-05
U39850-9|AAM45371.1| 440|Caenorhabditis elegans Polyq (poly glu... 39 0.007
U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly glu... 39 0.007
U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly glu... 39 0.007
U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly glu... 39 0.007
U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly glu... 39 0.007
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 39 0.007
>AL132860-27|CAB60521.1| 365|Caenorhabditis elegans Hypothetical
protein Y56A3A.33 protein.
Length = 365
Score = 47.6 bits (108), Expect = 2e-05
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEETCLYH----WGRVSSDSRYACCKSMLG--SRGCSVARSHV 754
C RC K F + DG + C+YH W ++ CC + G ++GC V HV
Sbjct: 94 CSRCSKGFYLNPDGT-ANAQKCVYHHRAKWDPLTGKKHLPCCSAKPGPSTKGCLVEDRHV 152
Query: 755 WSGTRPG------MNGPLEGYVRARSPRGGVYAIDTEMCYTTXGLELASIXVIAADGRLV 916
+S + ++ +G RS + V+A+D E+ +T GLE+A + ++ G+++
Sbjct: 153 FSQSWEDTLWEFVVSPQAKGKDDHRSNK--VFALDCELVHTLNGLEVARVSLVDMKGKVL 210
>AC006620-4|AAF39778.1| 305|Caenorhabditis elegans Hypothetical
protein C51G7.1 protein.
Length = 305
Score = 47.6 bits (108), Expect = 2e-05
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEETCLYH----WGRVSSDSRYACCKSMLG--SRGCSVARSHV 754
C RC K F + DG + C+YH W ++ CC + G ++GC V HV
Sbjct: 57 CSRCSKGFYLNPDGT-ANAQKCVYHHRAKWDPLTGKKHLPCCSAKPGPSTKGCLVEDRHV 115
Query: 755 WSGTRPG------MNGPLEGYVRARSPRGGVYAIDTEMCYTTXGLELASIXVIAADGRLV 916
+S + ++ +G RS + V+A+D E+ +T GLE+A + ++ G+++
Sbjct: 116 FSQSWEDTLWEFVVSPQAKGKDDHRSNK--VFALDCELVHTLNGLEVARVSLVDMKGKVL 173
>U39850-9|AAM45371.1| 440|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform f
protein.
Length = 440
Score = 39.1 bits (87), Expect = 0.007
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 745
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 181 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 240
Query: 746 SHVW-----SGTRPGMNGPLEGYVRARSPRGGVYAIDTEMCYTTXGLELASIXVI 895
HV ++ P+ RS R VYA+D EM YT G LA + ++
Sbjct: 241 VHVTDQLFKKELSTFVSTPVPVPNDQRSTR--VYALDCEMVYTIAGPALARLTMV 293
>U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform d
protein.
Length = 558
Score = 39.1 bits (87), Expect = 0.007
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 745
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 299 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 358
Query: 746 SHVW-----SGTRPGMNGPLEGYVRARSPRGGVYAIDTEMCYTTXGLELASIXVI 895
HV ++ P+ RS R VYA+D EM YT G LA + ++
Sbjct: 359 VHVTDQLFKKELSTFVSTPVPVPNDQRSTR--VYALDCEMVYTIAGPALARLTMV 411
>U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform e
protein.
Length = 573
Score = 39.1 bits (87), Expect = 0.007
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 745
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 314 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 373
Query: 746 SHVW-----SGTRPGMNGPLEGYVRARSPRGGVYAIDTEMCYTTXGLELASIXVI 895
HV ++ P+ RS R VYA+D EM YT G LA + ++
Sbjct: 374 VHVTDQLFKKELSTFVSTPVPVPNDQRSTR--VYALDCEMVYTIAGPALARLTMV 426
>U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform c
protein.
Length = 670
Score = 39.1 bits (87), Expect = 0.007
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 745
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 411 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 470
Query: 746 SHVW-----SGTRPGMNGPLEGYVRARSPRGGVYAIDTEMCYTTXGLELASIXVI 895
HV ++ P+ RS R VYA+D EM YT G LA + ++
Sbjct: 471 VHVTDQLFKKELSTFVSTPVPVPNDQRSTR--VYALDCEMVYTIAGPALARLTMV 523
>U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform g
protein.
Length = 672
Score = 39.1 bits (87), Expect = 0.007
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 745
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 413 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 472
Query: 746 SHVW-----SGTRPGMNGPLEGYVRARSPRGGVYAIDTEMCYTTXGLELASIXVI 895
HV ++ P+ RS R VYA+D EM YT G LA + ++
Sbjct: 473 VHVTDQLFKKELSTFVSTPVPVPNDQRSTR--VYALDCEMVYTIAGPALARLTMV 525
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 39.1 bits (87), Expect = 0.007
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Frame = +2
Query: 593 CVRCDKMFRMTRDGEYVKEE-TCLYHWGRVSSD-------SRYACCKSMLG-SRGCSVAR 745
C RC+K F+++ +G ++ C YH V+ + RY+CC + GC +
Sbjct: 1388 CSRCNKEFKLSPNGTMIRSTGICRYHNRGVAINGKRDTFRKRYSCCNEEFNVALGCKFSD 1447
Query: 746 SHVW-----SGTRPGMNGPLEGYVRARSPRGGVYAIDTEMCYTTXGLELASIXVI 895
HV ++ P+ RS R VYA+D EM YT G LA + ++
Sbjct: 1448 VHVTDQLFKKELSTFVSTPVPVPNDQRSTR--VYALDCEMVYTIAGPALARLTMV 1500
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,750,046
Number of Sequences: 27780
Number of extensions: 412996
Number of successful extensions: 940
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3589453552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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