Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_C18.2
(1356 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 36 0.013
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.013
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.64
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.64
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.5
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 2.0
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.9 bits (79), Expect = 0.013
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 542 PPXNPPXSPPXXGIXKXXKKPPPXPP 465
PP NPP PP G + PPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.013
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -2
Query: 599 PPSLXXPXXPXSXXXXPXPPPX--NPPXSPPXXGIXKXXKKPPPXPP 465
PP++ P + P P P PP PP G+ PPP PP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 31.1 bits (67), Expect = 0.37
Identities = 18/58 (31%), Positives = 19/58 (32%)
Frame = -2
Query: 590 LXXPXXPXSXXXXPXPPPXNPPXSPPXXGIXKXXKKPPPXPPXXXXXXNPXKXSPPXP 417
L P P P P P P PP + PPP PP P PP P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGP---PPPPPPPGVAGAGPPPPPPPPP 783
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.64
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Frame = -2
Query: 599 PPSLXXPXXPXSXXXXPXPPPXNPPXSPP-XXGIXKXXKKPPPXP---PXXXXXXNPXKX 432
PPS P P S P P P PP K PP P P P K
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 431 SPPXP 417
P P
Sbjct: 184 PPSAP 188
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/80 (25%), Positives = 23/80 (28%)
Frame = -3
Query: 601 SPXPXXXPXPPXXXXXXXXPXXKTPPXPPLXXXXXXXPKNXPPFPXXXXXXXTPXNXPXX 422
S P P PP P PP P + P + PP P + P
Sbjct: 121 SAAPPSAPAPPTPQSELRPPT-SAPPRPSIPPPS---PASAPPIPSKAPPIPSSLPPPAQ 176
Query: 421 PPXPXKXKXXXXSFPXPXXP 362
P P K S P P
Sbjct: 177 PAAPVKSPPSAPSLPSAVPP 196
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.64
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -2
Query: 572 PXSXXXXPXPPPXNPPXSPPXXGIXKXXKKPPPXPPXXXXXXNPXKXSPPXP 417
P S P PP P PP PPP PP + SPP P
Sbjct: 224 PTSTSAPPIPPSI-PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Frame = -2
Query: 581 PXXPXSXXXXPXPPPXNPPXSPPXXGIXKXXKKP-PPXPPXXXXXXNPXKXSPPXP 417
P P P PP PP +PP + P PP P +PP P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/61 (27%), Positives = 20/61 (32%)
Frame = -2
Query: 599 PPSLXXPXXPXSXXXXPXPPPXNPPXSPPXXGIXKXXKKPPPXPPXXXXXXNPXKXSPPX 420
PPSL P P PP PP +P + PP PP +P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPL-PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486
Query: 419 P 417
P
Sbjct: 487 P 487
Score = 27.9 bits (59), Expect = 3.4
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Frame = -3
Query: 598 PXPXXXPX--PPXXXXXXXXPXXKTPPXPPLXXXXXXXPKNXPPFPXXXXXXXTPXNXPX 425
P P P PP P PP PP P N PP P N
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAP--PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTS 288
Query: 424 XPPXP 410
PP P
Sbjct: 289 KPPLP 293
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Frame = -2
Query: 599 PPSLXXPXXPXSXXXXPXPPPXN-PPXSPPXXGI----XKXXKKPP-PXPPXXXXXXNPX 438
PPS P S P PPP PP P G+ K PP P P +
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Query: 437 KXSPPXP 417
+ S P P
Sbjct: 1253 RSSVPSP 1259
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = -2
Query: 581 PXXPXSXXXXPXPPPXNPPXSPPXXGIXKXXKKPP-PXPPXXXXXXNPXKXSPPXP 417
P P S P PP P S I PP P P P +PP P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = -2
Query: 596 PSLXXPXXPXSXXXXPXPPPX--NPPXSPPXXGIXKXXKKPPPXPPXXXXXXNPXKXSPP 423
PS+ P P P P P PP P GI P P P P +PP
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI-----PPVPKPAAGVPPVPPPSEAPP 1199
Query: 422 XP 417
P
Sbjct: 1200 VP 1201
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Frame = -2
Query: 599 PPSLXXPXXPXSXXXXPXP--PPXNPPXSPPXXGIXKXXKKPPPXPPXXXXXXNPXKXSP 426
P L P P P PP PP P + +PP P P SP
Sbjct: 945 PTKLTRPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSP 1004
Query: 425 PXP 417
P
Sbjct: 1005 AAP 1007
Score = 27.5 bits (58), Expect = 4.5
Identities = 21/86 (24%), Positives = 22/86 (25%), Gaps = 1/86 (1%)
Frame = -3
Query: 664 PLXXXPPLXXPXXXPXFFXXFSPXPXXXPXPPXXXXXXXXPXXKTP-PXPPLXXXXXXXP 488
P PP+ P P P P PP P P P P P
Sbjct: 1027 PSADAPPIPVPSTAP-------PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
Query: 487 KNXPPFPXXXXXXXTPXNXPXXPPXP 410
PP P P PP P
Sbjct: 1080 SGAPPVPAPSGIPPVPKPSVAAPPVP 1105
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +1
Query: 418 GXGGXXXLGXXXXXXXGGXGGGFLXXXXXPXXGGXXGGFXGGGXG 552
G GG G GG GGG GG GGF GG G
Sbjct: 146 GRGGSR--GGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 988,137
Number of Sequences: 5004
Number of extensions: 12773
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 747178928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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