Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C18.2
         (1356 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            26   2.2  
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    26   2.9  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    26   2.9  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 25/82 (30%), Positives = 25/82 (30%)
 Frame = -2

Query: 662 PXXXSXPXXXLXXPXFFXXLFPPSLXXPXXPXSXXXXPXPPPXNPPXSPPXXGIXKXXKK 483
           P     P   L  P F   L P  L  P           PPP  PP  PP  G       
Sbjct: 545 PQFLPPPLNLLRAPFF--PLNPAQLRFPAG-FPNLPNAQPPPAPPP--PPPMG------- 592

Query: 482 PPPXPPXXXXXXNPXKXSPPXP 417
           PPP P        P    PP P
Sbjct: 593 PPPSPLAGGPLGGPAGSRPPLP 614


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = +1

Query: 424 GGXXXLGXXXXXXXGGXGGGFLXXXXXPXXGGXXGGFXGGGXGFXXXEXG 573
           GG    G       GG GGG           G  GGF GGG G    + G
Sbjct: 59  GGDDGYGGGGRGGRGGRGGGRGRGRGRGGRDGG-GGFGGGGYGDRNGDGG 107


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
 Frame = -2

Query: 599 PPSLXXPXXPXSXXXXPXPPP----XNPPXSPPXXGIXKXXKKPPP 474
           PP++  P  P      P  PP     N P  PP  G+     +PPP
Sbjct: 80  PPTMNMPPRPGMIPGMPGAPPLLMGPNGPLPPPMMGM-----RPPP 120


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,226
Number of Sequences: 2352
Number of extensions: 3854
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 156055680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)