Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C17.2
         (1312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    29   1.4  
SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pom...    28   2.5  
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    28   2.5  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    28   2.5  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    28   3.3  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   7.6  

>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 18  PYTXPSLSSXXXPXPXSFSXWCXVXSXXFLLGVXPLSFCQXPXAVCSRSSPSC 176
           P T  S+S    P P  FS +       +L    P S  + P ++ SR SP C
Sbjct: 264 PQTPISMSPPIPPTPSQFSAFMYQNQQSYL---SPQSHYENPLSISSRPSPCC 313


>SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 124

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -2

Query: 813 KLLKT*NKIQTESVLYRQYFGTN*NAPLQNHPTYFRH 703
           ++ +T  ++ T S+L + Y+G +   P +N+PT +R+
Sbjct: 20  EMAQTNKEVPTTSLLSKDYYGHSIEEPDENNPTRWRY 56


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 572 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 691
           I R S H R+  G +R Q R+K      R  S    GP+R
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 572 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 691
           I R S H R+  G +R Q R+K      R  S    GP+R
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 658 PVCAMGTFLSPLTASGTFLGAVMVRTP-SDDSRDSTVSGAAP 536
           P  +   FL+P+T SGTF  +     P S   R +T S A P
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 508 SSSDVTRCLKARRLRLWNRGCHQTGFSPSPRRGRYPT 618
           SS   TR  +  R     RGC  T   P PR G   T
Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAGHSHT 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,097
Number of Sequences: 5004
Number of extensions: 51904
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)