Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C14.2
         (1329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    36   0.013
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    33   0.067
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    27   4.4  

>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 677 AEDLNEKVFWWSMGETLAIVCVAFTQVMILKNFFSDK 787
           AE  N++V WWS+ +T+ +V V   Q+  LK  F  K
Sbjct: 160 AESTNDRVKWWSILQTVILVSVCVFQIFYLKRLFEVK 196


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 33.5 bits (73), Expect = 0.067
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +2

Query: 695 KVFWWSMGETLAIVCVAFTQVMILKNFF 778
           ++FW+S+ E++ +V ++  QV I+K FF
Sbjct: 175 RIFWFSLAESIMVVALSALQVFIVKTFF 202


>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 656 RLKDVKEAEDLNEKVFWWSMGETLAIVCVAFTQVMIL 766
           RL   +  ++L +K  WWS+G  + I  + F+   +L
Sbjct: 47  RLTITQRVKELTKKYGWWSLGVYIGISVLDFSASFVL 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,448
Number of Sequences: 5004
Number of extensions: 45106
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 729294326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)