Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C13.2
         (1312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    29   1.9  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   5.7  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    27   7.6  

>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 209  GLWLQHCAWCIARAQPLEADERQQP 135
            G+ +  C +C++RA+PLE   +++P
Sbjct: 1027 GMLMSVCFYCVSRARPLETLSKERP 1051


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 876 FVKDFLSKIYLKEAFKGH*FCDGT 805
           F+ +F+SK+Y+++AF G  F + T
Sbjct: 186 FLVEFISKVYVEDAFLGDSFMETT 209


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = -1

Query: 646 ISSTFAHFSTRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 482
           +  +   F++RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 280 VGGSILEFNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,562,403
Number of Sequences: 5004
Number of extensions: 63168
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)