Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C13.2
         (1312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1108 + 30961600-30962013,30963131-30964465                       35   0.16 
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175...    30   3.5  
12_02_0875 - 23920023-23920967,23921045-23921599,23921678-239220...    29   8.1  
05_03_0313 + 12200743-12200955,12201238-12201622,12201997-122022...    29   8.1  

>04_04_1108 + 30961600-30962013,30963131-30964465
          Length = 582

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 155 LPAVVPSQCTKHNAXAKVPVSXSSIASLWKLPQGPGRFKC 274
           +P+ VP+  T   A     VS    A++  +P GPGRF C
Sbjct: 61  VPSAVPAPATATAAAPPTRVSCGGCAAVLSVPHGPGRFSC 100


>04_04_0842 +
           28616729-28617078,28617166-28617359,28617416-28617582,
           28617693-28617928,28618049-28618160
          Length = 352

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 265 STRPLRQFPKGRNAAXTXRDFGXSIVLGALRGHNRWKLTKGSSXHTG 125
           S +PLR+ P    +A T R +G     G + G+  W+L   +  H G
Sbjct: 101 SFQPLRENPVLGPSAATLRKYGALDWYGVVHGNQAWRLETSTWLHAG 147


>12_02_0875 -
           23920023-23920967,23921045-23921599,23921678-23922083,
           23922175-23922452
          Length = 727

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 647 DLLYREIPRRVFHTDTR*HGGITDQVHAQRLSLPHRSAQDRLIA 778
           D   RE  RR  +   R HGG+      +RLS  H+S QD   A
Sbjct: 437 DAKLREDSRRRVNVGGRNHGGVGGGEATKRLSRGHKSMQDTTAA 480


>05_03_0313 +
           12200743-12200955,12201238-12201622,12201997-12202274,
           12202359-12202976
          Length = 497

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 145 GSSXHTGSEKRETRQEATSXGSQXTXXTAKRGGSRGEDERRPGS 14
           G++ H+G++  ETR+EA   G+     +  +GG+ G  ++ P S
Sbjct: 170 GNTGHSGNDYPETREEAMYMGNNNGYRS--QGGTNGISKQAPSS 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,378,236
Number of Sequences: 37544
Number of extensions: 452507
Number of successful extensions: 1274
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4097157504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)