Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C10.2
         (1279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    41   3e-04
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    29   1.0  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    27   5.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   7.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   9.7  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   9.7  

>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +1

Query: 367 SNEIFLIVAATIYYHEDNYEAALKILHNA-ESLELRAFTLQCLLAMNRPDLARKQLKLLQ 543
           S+ +   + A       +++ A+ +L  + E+LE  A  +   L  ++ + A + LK   
Sbjct: 94  SDSVVQTLGAIFQIKNGSFDDAMDLLKKSVENLEAVALQVYIHLREHKIEAAEQTLKQAL 153

Query: 544 DIEDDGTLTQLAQAWLNLIQGG-PGIQDAHYSVMELS 651
           D  D+  + QLAQ+W+ ++ GG     DA Y   EL+
Sbjct: 154 DWADEEIVLQLAQSWIKIVSGGVESYNDAFYVFEELN 190


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 85  SMSKMHFMLEIISKLLMRHKALALLHPWXALQRDAFLYRSYIAQ 216
           S  K+  +   + +LL + K L L H W   + D ++YR+ +A+
Sbjct: 267 SSPKLQQIYHRLDELLNKLKHLTLTHRWTLRETDLYVYRASLAE 310


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 427 AALKILHNAESLELRAFTLQCLL---AMNRPDLARKQLKLLQDIEDDGTL 567
           A +K+ H+ + L     T+  L    AM   DL +K  +LLQ I DDG +
Sbjct: 267 AQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 356 VRNCPMKYS*LWLQQFTIMKIIMKLH*KSFI 448
           +R CP      + QQ +I+ +I++ H +SF+
Sbjct: 857 MRTCPTNILEFYFQQLSILVLIVRQHIRSFL 887


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 139 HKALALLHPWXALQRDAFLYRSYIAQGNYRIVQQELKTA 255
           ++ L L   +  ++R AFLY  ++   ++ ++ QEL+ A
Sbjct: 334 YRRLCLRDFYKFIKRVAFLYHKFMIPSDHVVISQELQDA 372


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +1

Query: 193 LYRSYI-AQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELS 369
           LYR+    +G+Y IVQ+  ++A+P+       +  L  D N S +VAD    +   T  +
Sbjct: 661 LYRTTSNTRGDY-IVQRTQQSANPLTNIEPQDMSNLSTDINASDVVADSTNSILYPTSTA 719

Query: 370 NEIFLIVAATI 402
           + +   +A+ +
Sbjct: 720 SSVANTIASDV 730


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,757,403
Number of Sequences: 5004
Number of extensions: 66311
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)