Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_C10.2
(1279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 136 3e-32
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 131 1e-30
03_06_0191 - 32228642-32228949,32229028-32230567 33 0.64
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 30 3.4
03_02_0030 + 5129234-5129568,5130020-5130651,5130936-5131243,513... 30 3.4
01_03_0196 - 13696056-13697448,13697676-13697713 30 3.4
01_03_0224 + 13940419-13941786 29 5.9
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 29 7.9
01_06_1539 + 38107108-38109649,38110563-38110915 29 7.9
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 136 bits (329), Expect = 3e-32
Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 1/252 (0%)
Frame = +1
Query: 172 ALQRDAFLYRSYIAQGNYRIVQQEL-KTADPMLQPLKSLVDYLLPDANKSAIVADIDARV 348
A +RDA ++RSY+A G+Y++V E+ +A LQ +K L YL D +SAIV+ + +
Sbjct: 36 AAERDAIVFRSYVALGSYQLVISEIDSSAATSLQAVKLLALYLSGD-KESAIVS-LKEWL 93
Query: 349 AKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQ 528
+ SN + ++A I+ HE +Y ALK H+ +L+L A +Q + M+R D A KQ
Sbjct: 94 SDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQ 153
Query: 529 LKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXX 708
LK++Q I++D TLTQLA AWL++ GG I++A+ + +E
Sbjct: 154 LKIMQQIDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAE-KYPMTGMVLNGKAVCCM 212
Query: 709 XXXMWEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXXKPPEVSARYLAQLLDSHPQHPFV 888
++EAE L +A ++ + KP S+RYL+QL SHP H V
Sbjct: 213 HMGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGKP---SSRYLSQLKLSHPDHVLV 269
Query: 889 KEYKAKTDEFQR 924
K + D F+R
Sbjct: 270 KRAVSAEDNFER 281
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 75 DXLFDVKNAFYVGNYQQAINEA 140
D LF+++N FY+G YQ AIN +
Sbjct: 5 DLLFNLRNLFYLGAYQAAINNS 26
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 131 bits (317), Expect = 1e-30
Identities = 87/262 (33%), Positives = 132/262 (50%), Gaps = 2/262 (0%)
Frame = +1
Query: 145 ALALLHPWXALQRDAFLYRSYIAQGNYRIVQQELKT-ADPMLQPLKSLVDYLLPDAN-KS 318
A A L P +RD+ LYRSYIA G++++V E+ A LQ ++ L YL A K
Sbjct: 34 ARAALSPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKE 93
Query: 319 AIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLA 498
+ + ++ +A SN I +VA T+ HE +Y ALK ++ ++EL A +Q L
Sbjct: 94 SAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQ 153
Query: 499 MNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXX 678
M+R D A KQL+++Q +++D TLTQLA AW++L+ GG IQ+AH +LSE
Sbjct: 154 MHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLI 213
Query: 679 XXXXXXXXXXXXXMWEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXXKPPEVSARYLAQL 858
+E+AE L ++ ++ + K ++RYL QL
Sbjct: 214 LNGKALCLMHMGN-FEDAEGLLLESLNKDAKDAETLANLVVCSLNLGKS---ASRYLNQL 269
Query: 859 LDSHPQHPFVKEYKAKTDEFQR 924
+HP H VK + D F R
Sbjct: 270 KLAHPDHMLVKRMSSAEDSFDR 291
Score = 31.1 bits (67), Expect = 1.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 75 DXLFDVKNAFYVGNYQQAINEAQSV 149
D LF ++N+FYVG YQ I Q++
Sbjct: 8 DHLFGLRNSFYVGAYQAVITGVQAI 32
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 32.7 bits (71), Expect = 0.64
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = +1
Query: 247 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 426
K P + S+++ L + V V + TE+++ + + + + N++
Sbjct: 459 KGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALC-KQGNFK 517
Query: 427 AALKILH----NAESLELRAFTLQCLLAMNRPDLARKQLKLLQ 543
AL +L N ES+ L+CL+ + DLA + +K ++
Sbjct: 518 GALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIR 560
>10_08_0532 + 18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 30.3 bits (65), Expect = 3.4
Identities = 29/119 (24%), Positives = 47/119 (39%)
Frame = +1
Query: 97 MHFMLEIISKLLMRHKALALLHPWXALQRDAFLYRSYIAQGNYRIVQQELKTADPMLQPL 276
++ +++ K + KA AL+ + R F Y G Y V Q K AD + L
Sbjct: 742 INLLVDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYFKVGQVSKAADLTKKAL 801
Query: 277 KSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNA 453
S + +PD + + A K E + E+ ++ + D Y LK NA
Sbjct: 802 ASASNEWIPDLTNVLMSLNYFAE-QKNVEAAEEMMSLLQRLVTPTRDIYHGLLKTYVNA 859
>03_02_0030 +
5129234-5129568,5130020-5130651,5130936-5131243,
5131396-5131504,5131871-5131956,5132173-5132232,
5133164-5133340,5133742-5133780
Length = 581
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 142 KALALLHPWXALQRDAFLYRSYIAQGNYRIVQQELK 249
KAL LHP QR A +++ YIA+ + I+Q+ K
Sbjct: 538 KALLCLHPDKLQQRGAAMHQKYIAEKVFDILQEAWK 573
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 30.3 bits (65), Expect = 3.4
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +1
Query: 406 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 534
YH + ++++K LH+ + L + A + C+++ P L ++ K
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58
>01_03_0224 + 13940419-13941786
Length = 455
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 478 TLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 612
T +CL+ RP LAR L ++ D+ G ++ W + + GGP
Sbjct: 368 TAECLVLRRRPRLARTNLFVVTDVRRVG-FDRVDFGWGDPVYGGP 411
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 29.1 bits (62), Expect = 7.9
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 852 GQVSGRHLRWFPEMRRGERKAEQQVGVLWGAGRCVCQLLFSLFPHTSGSCSPST 691
G R W PE R ER+ ++ G W R + Q + +L S CSPST
Sbjct: 100 GMAGTREGSWTPERRGEERRRRREEG-SWFLARSL-QSVGTLHVGFSSRCSPST 151
>01_06_1539 + 38107108-38109649,38110563-38110915
Length = 964
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 133 MRHKALALLHPWXALQRDAFLYRSYIAQGN-YRIVQQELKTADPML 267
+RH+ + LH + FL Y+ GN Y +++E K P L
Sbjct: 729 IRHRNILKLHAFLTGGESNFLVYEYVVNGNLYDAIRREFKAGQPEL 774
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,356,962
Number of Sequences: 37544
Number of extensions: 502377
Number of successful extensions: 1355
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3969121332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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