Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_C10.2
(1279 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical pr... 103 3e-22
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 33 0.43
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 33 0.43
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 33 0.43
Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical pr... 31 2.3
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 29 9.3
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 29 9.3
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 29 9.3
>Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical
protein F45G2.4 protein.
Length = 292
Score = 103 bits (247), Expect = 3e-22
Identities = 72/254 (28%), Positives = 117/254 (46%), Gaps = 2/254 (0%)
Frame = +1
Query: 178 QRDAFLYRSYIAQGNYRIVQQELKTADPM--LQPLKSLVDYLLPDANKSAIVADIDARVA 351
++D +LYRSYIAQG I +E+ A L ++ ++ A K I+A++ VA
Sbjct: 37 EKDVYLYRSYIAQGQAFIPLKEIPAATKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVA 96
Query: 352 KGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQL 531
+ +EI ++AATI D + A + + E LE RA + L+ MN+ LA ++
Sbjct: 97 S-RNIKSEIAAVLAATILNEADLSQDAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEV 155
Query: 532 KLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXX 711
K + I++D TL+QLA A + ++DA Y E+S+
Sbjct: 156 KKMNQIDEDATLSQLANALVTSFGASGKVKDALYIYSEMSDKYGRTTDLEMHQAVVSILT 215
Query: 712 XXMWEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXXKPPEVSARYLAQLLDSHPQHPFVK 891
+ AE+ L A R + K +V R+++QL HP HP+V
Sbjct: 216 QD-YAAAEELLESALERDNKDADVLINSIVSAQLNEKDDDVVERFISQLKHEHPNHPWVI 274
Query: 892 EYKAKTDEFQRLAA 933
++ K EF R+A+
Sbjct: 275 DFNEKEAEFDRVAS 288
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 33.1 bits (72), Expect = 0.43
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 820 KPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYXPQ 948
K ++ A +A +D PQ F K +KAK DE +RL Q Q
Sbjct: 96 KEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQ 138
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 33.1 bits (72), Expect = 0.43
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 820 KPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYXPQ 948
K ++ A +A +D PQ F K +KAK DE +RL Q Q
Sbjct: 96 KEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQ 138
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.43
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 820 KPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYXPQ 948
K ++ A +A +D PQ F K +KAK DE +RL Q Q
Sbjct: 99 KEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQ 141
>Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical
protein C07E3.8 protein.
Length = 294
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 412 EDNYEAALKILHNAESLELRAFTLQCLLAMNR 507
E +E + H+ ESLE+ +FT+ CLL NR
Sbjct: 117 EGVFETPFEKPHHFESLEITSFTIDCLLYGNR 148
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 28.7 bits (61), Expect = 9.3
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 220 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 390
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421
Query: 391 AATIYYHEDNYEAALKILHNAESLEL 468
A +Y +E YE+ALKIL + + ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 28.7 bits (61), Expect = 9.3
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 220 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 390
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421
Query: 391 AATIYYHEDNYEAALKILHNAESLEL 468
A +Y +E YE+ALKIL + + ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 28.7 bits (61), Expect = 9.3
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 220 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 390
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 418 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 469
Query: 391 AATIYYHEDNYEAALKILHNAESLEL 468
A +Y +E YE+ALKIL + + ++
Sbjct: 470 LAHLYLYERKYESALKILMSCQDFQI 495
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,632,078
Number of Sequences: 27780
Number of extensions: 392956
Number of successful extensions: 1005
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3568584636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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