Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C09.2
         (1315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces pombe...    38   0.003
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    30   0.62 
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    29   1.9  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    27   7.6  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    27   7.6  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    27   7.6  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    27   7.6  

>SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 120

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 27/94 (28%), Positives = 46/94 (48%)
 Frame = +2

Query: 104 MENDALDDCEEXILVYLEFKDSVNIEKYRNIHILGIDSKNPIVQMDDTFFIGKYDNPFGT 283
           +E D +DD E  +  +     S++ +   +  ILGID  +PIV++   FF G +  P GT
Sbjct: 8   LETD-VDDVENIVFQFQN--SSLDFQSSDDFSILGIDQPHPIVRIGGMFFRGTWHQPIGT 64

Query: 284 YLFFEEDPSPNTDDPLFDRLSEKKFKICLQNKKM 385
            +     PS N  +   D L   K ++ L+  ++
Sbjct: 65  DIVV---PSVNDSELSRDGLVLCKRRLMLEQIRL 95


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 551 WFWCFISVFSCXCIYCFLNGFKIDSLYVIIYFVGLIARYTVFTLFR 414
           +F   +  F+C     +L+G+K  S++  I F+GL+A  T++  FR
Sbjct: 26  FFLSVVLFFNCLAATLYLHGYKHSSVFFGISFLGLLA--TMYLWFR 69


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 952

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +2

Query: 134  EXILVYLEFKDSVNIEKYRNIHILG--IDSKNPIVQMDDTFFIGKYDNPFGTYLFFEEDP 307
            E + V+ E  D    +  +N  +LG  +D +N +VQ D++  I   +N     L F+E  
Sbjct: 776  EKVSVFKEMSDIALRDMDKNRKLLGENVDVRNIVVQKDESLNIDLQNNAVVPELHFKEGM 835

Query: 308  SPNTDDPLFDRLSEKK 355
              ++ +  +  L+E K
Sbjct: 836  VYDSLENAYTYLAESK 851


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 414 PKEGEDCVPGNQSNKIDDDVKAVNFKTVQEAINTXTTEYRDKTPE 548
           PK+ E   P  +S K D+D    +     E +N  T ++ DK+ E
Sbjct: 150 PKKPEAKEPSPKSRKTDEDKHDKDSNEKIEDVNEKTIKFADKSQE 194


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -3

Query: 545 WCFISVFSCXCIYCFLNGFKIDSLYVIIYFVGLIAR---YTVFTLFRRHISMLHL 390
           W  I  +    +Y  L+ F I +  + + ++GL+ +   Y + T    H+SMLH+
Sbjct: 16  WTQIITYIAILVYA-LSFFGISTGVLSLSWIGLLQKRQLYEIITYVTLHLSMLHI 69


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 575 YLNLIY*NWFWCFISVFSCXCIYCFLNG 492
           Y+ L Y + F C +    C C++ F NG
Sbjct: 30  YMVLAYNHKFDCIVVTIYCGCLFWFSNG 57


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 25/100 (25%), Positives = 43/100 (43%)
 Frame = +3

Query: 216 VKIQLYKWMILSLLESMTTLLVHICFLKKIHHRILMTHCLIDCLKKNLKYVCKTRKCIQM 395
           +K +L K  +L   E     L   C     +++ L++H   DC+K+        R+   +
Sbjct: 142 LKFRLGKMCLLFNDEKTRMFLAFECKFSDENYKDLISHAS-DCMKEFTNR--NLREDFLL 198

Query: 396 QHAYVSPKEGEDCVPGNQSNKIDDDVKAVNFKTVQEAINT 515
             ++ S    ED       N +  D ++  FKT+ E INT
Sbjct: 199 HISFASSLTNED----EYQNWVSQDRESHFFKTMNEIINT 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,693
Number of Sequences: 5004
Number of extensions: 55884
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)