Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C07.2
         (1285 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   125   8e-31
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    29   0.057
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   4.9  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   6.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  125 bits (301), Expect = 8e-31
 Identities = 63/149 (42%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
 Frame = +3

Query: 534 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI--NNQPPIRRGD--GP 701
           GY +PT IQ    P+ +SG++L+  AQTGSGKT A++LP I ++  +  PP    +   P
Sbjct: 177 GYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQP 236

Query: 702 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 881
           + ++++PTRELA QI      F + S V+   ++GG     Q   +  G  I++ATPGRL
Sbjct: 237 VVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGRL 296

Query: 882 IDFLEKGTTNLQRCTYLVLDEADRMLDMG 968
            DF+ +G  +     Y VLDEADRMLDMG
Sbjct: 297 KDFVNRGNVSFNSLKYFVLDEADRMLDMG 325


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 29.5 bits (63), Expect = 0.057
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 566 LSLNGRRFFVTHCSLHLVAHNQENLLLQSI 477
           L+ NG+  FV+H   HL+ H Q +L+ QSI
Sbjct: 119 LTPNGKIVFVSHTVEHLLGHLQTDLMGQSI 148


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 675 VGYLCAQLLARCRPTFCRN 619
           +GY+C   +  CRP  C N
Sbjct: 253 LGYICEINVDDCRPGACHN 271


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 635 GLHLASNCAHK*PTAYSER*WSDCFGLGAYQRVSTTNSASCCRF-WTHILCS*HVCVW 805
           G  LA N  +     YS   W+D  G G ++           +F +T+ LC   VC++
Sbjct: 113 GRFLAPNLTYLLVALYSGYVWTDILGFGYFREYLAEAVQLYFQFYYTYFLCV-IVCIF 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,828
Number of Sequences: 336
Number of extensions: 4129
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 37816048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)