Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_C07.2
(1285 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 219 7e-58
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 173 6e-44
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 150 5e-37
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 133 4e-32
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 129 7e-31
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 116 5e-27
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 111 2e-25
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 104 3e-23
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 104 3e-23
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 101 2e-22
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 99 2e-21
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 98 2e-21
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 98 2e-21
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 94 4e-20
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 92 2e-19
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 91 3e-19
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 86 1e-17
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 82 1e-16
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 82 2e-16
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 81 3e-16
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 73 7e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 67 4e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 65 2e-11
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.005
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.005
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 31 0.45
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.45
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 1.0
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 1.0
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 5.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 219 bits (535), Expect = 7e-58
Identities = 103/159 (64%), Positives = 125/159 (78%), Gaps = 1/159 (0%)
Frame = +3
Query: 525 RTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 704
+ +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN QP + GDGPI
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197
Query: 705 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 884
LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL RGVEI IATPGRL+
Sbjct: 198 VLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLL 257
Query: 885 DFLEKGTTNLQRCTYLVLDEADRMLDMGLNHN-QKIIEQ 998
D L+ TNL+R TYLVLDEADRMLDMG +KI++Q
Sbjct: 258 DMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQ 296
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 173 bits (420), Expect = 6e-44
Identities = 80/150 (53%), Positives = 108/150 (72%), Gaps = 3/150 (2%)
Frame = +3
Query: 528 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 707
++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++ G+GPIA
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIA 494
Query: 708 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 887
+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+ TPGR+ID
Sbjct: 495 IIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMID 554
Query: 888 FLEKG---TTNLQRCTYLVLDEADRMLDMG 968
L TNL RCTYLVLDEADRM D+G
Sbjct: 555 VLSANAGRVTNLHRCTYLVLDEADRMFDLG 584
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 150 bits (363), Expect = 5e-37
Identities = 76/154 (49%), Positives = 101/154 (65%), Gaps = 3/154 (1%)
Frame = +3
Query: 516 KV*RTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 695
KV + + YKEP+ IQ P+ + K+L+G+A+TGSGKT A+I+P I+ I+ PP+ +
Sbjct: 262 KVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESN 321
Query: 696 ---GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 866
GP A+VLAPTRELAQQIQ F R V GG EQ+ + +G IV+A
Sbjct: 322 MHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVA 381
Query: 867 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 968
TPGRL+D LE+ L +CTY+V+DEADRMLDMG
Sbjct: 382 TPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMG 415
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 133 bits (322), Expect = 4e-32
Identities = 66/148 (44%), Positives = 96/148 (64%)
Frame = +3
Query: 537 YKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 716
YKEPTPIQA WP ++G+++VG+A+TGSGKT+A+ +PA+ ++N + P LV+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVV 242
Query: 717 APTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE 896
+PTRELA Q + + ++ V+GGAPK EQAR + ++I TPGRL+D +
Sbjct: 243 SPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGRLLDLIN 301
Query: 897 KGTTNLQRCTYLVLDEADRMLDMGLNHN 980
G+ + + YLVLDEADRMLD G +
Sbjct: 302 DGSIDCSQVGYLVLDEADRMLDTGFEQD 329
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 129 bits (312), Expect = 7e-31
Identities = 68/158 (43%), Positives = 98/158 (62%), Gaps = 13/158 (8%)
Frame = +3
Query: 534 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI-VHINNQP---PIRRGDG- 698
GY +PTP+Q PI SG++L+ AQTGSGKT ++ P + + + P P+ + G
Sbjct: 188 GYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGM 247
Query: 699 --------PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 854
P L+LAPTREL QI + + F + S+VR V+GGA R Q R +++G +
Sbjct: 248 GYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCD 307
Query: 855 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 968
++ ATPGRL+D +++G +L +LVLDEADRMLDMG
Sbjct: 308 LLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMG 345
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 116 bits (280), Expect = 5e-27
Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Frame = +3
Query: 531 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 707
+G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I + NN P A
Sbjct: 64 LGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FA 117
Query: 708 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 887
+VLAPTRELA QI + G + VR+ + GG QA L + +++ TPGRL+D
Sbjct: 118 VVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMD 177
Query: 888 FLE--KGTTNLQRCTYLVLDEADRMLDM 965
LE KG +L+ YL++DEADR+LDM
Sbjct: 178 HLENTKG-FSLKNLKYLIMDEADRLLDM 204
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 111 bits (268), Expect = 2e-25
Identities = 57/145 (39%), Positives = 85/145 (58%)
Frame = +3
Query: 534 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 713
G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H+ + AL+
Sbjct: 88 GFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKST---LANSNTRALI 144
Query: 714 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 893
L+P RELA Q +V DF + +R+ + GG EQ L +IV+ATPGR +
Sbjct: 145 LSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLK 204
Query: 894 EKGTTNLQRCTYLVLDEADRMLDMG 968
+ L Y+V DEADR+ +MG
Sbjct: 205 VEMKLELSSIEYVVFDEADRLFEMG 229
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 104 bits (249), Expect = 3e-23
Identities = 52/142 (36%), Positives = 82/142 (57%)
Frame = +3
Query: 534 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 713
G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++ ++ + + L+
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLI 117
Query: 714 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 893
L PTRELA Q QV G V+ GG R+ L V IV+ TPGR++D
Sbjct: 118 LVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLA 177
Query: 894 EKGTTNLQRCTYLVLDEADRML 959
KG + CT V+DEAD++L
Sbjct: 178 GKGVADFSECTTFVMDEADKLL 199
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 104 bits (249), Expect = 3e-23
Identities = 64/163 (39%), Positives = 99/163 (60%), Gaps = 4/163 (2%)
Frame = +3
Query: 516 KV*RTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRR 689
K + MG++ T IQ + P ++G++++G A+TGSGKTLA+++P I ++ P R
Sbjct: 102 KAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RN 160
Query: 690 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 869
G G I +++PTRELA QI VA + + V GGA +R +A L +GV +++AT
Sbjct: 161 GTGVI--IISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVAT 218
Query: 870 PGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGLNHNQKII 992
PGRL+D L+ KG + LV+DEADR+L++G + I
Sbjct: 219 PGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGFEDEMRQI 260
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 101 bits (242), Expect = 2e-22
Identities = 56/147 (38%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = +3
Query: 531 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 710
+G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P + + +P ++ L
Sbjct: 277 LGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVL 334
Query: 711 VLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDF 890
+L PTRELA Q VA + + GG + Q ++L + +IVIATPGR ID
Sbjct: 335 ILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDH 394
Query: 891 LEKGT-TNLQRCTYLVLDEADRMLDMG 968
+ ++ +V+DEADRML+ G
Sbjct: 395 MRNSQGFTVENIEIMVMDEADRMLEDG 421
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 98.7 bits (235), Expect = 2e-21
Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Frame = +3
Query: 531 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPPI--RRGDG 698
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 699 PIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEIVIAT 869
A+++APTREL QQI VA + + ++ + V GG K+ + + +GV I+I T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 870 PGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGLNHNQKIIEQY 1001
PGRL D LE ++ + ++VLDE DR++DMG I Y
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSY 321
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 98.3 bits (234), Expect = 2e-21
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Frame = +3
Query: 537 YKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALV 713
+++PT +Q++ P+A+ GK+LV A+TGSGKT AY++P + + Q I G AL+
Sbjct: 34 FEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALL 93
Query: 714 LAPTRELAQQIQQVAADFGH--TSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 887
L PTRELAQQ+ V + ++R V + Q L +IVIATP R +
Sbjct: 94 LVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVV 153
Query: 888 FLEKGTTNLQRCTYLVLDEADRMLDMGLNHNQKIIEQ 998
+ G L + +LV+DEAD ML G N + K + +
Sbjct: 154 HVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSR 190
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 98.3 bits (234), Expect = 2e-21
Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 4/149 (2%)
Frame = +3
Query: 525 RTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 704
+ + EPT IQ + G+N +G A+TGSGKT A+ LP I + P G
Sbjct: 23 KALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDP-----SGIF 77
Query: 705 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 884
AL+L PTRELA QI + A G +++ + GG Q+ DL + +V+ATPGRL
Sbjct: 78 ALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLA 137
Query: 885 DFL----EKGTTNLQRCTYLVLDEADRML 959
D + E+ L+R +LV+DEADR+L
Sbjct: 138 DLIRSNGEETIAGLRRIKFLVMDEADRLL 166
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 93.9 bits (223), Expect = 4e-20
Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Frame = +3
Query: 549 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTR 728
T IQ Q P A+ G++++G A+TGSGKTLA+I+P I ++ + DG ALV++PTR
Sbjct: 63 TEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTR 121
Query: 729 ELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT 908
ELA Q + G + GG +E+ L R + I++ TPGRL+ +++
Sbjct: 122 ELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVN 180
Query: 909 -NLQRCTYLVLDEADRMLDMG 968
+ L+LDEADR+LDMG
Sbjct: 181 FDTSGLQMLILDEADRILDMG 201
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 91.9 bits (218), Expect = 2e-19
Identities = 59/146 (40%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Frame = +3
Query: 534 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 707
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 708 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 887
LV+APTRELA QI Q + +R + GG ++Q R L + +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 888 FLEKG--TTNLQRCTYLVLDEADRML 959
+ + T N ++ LVLDEADR+L
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLL 281
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 91.1 bits (216), Expect = 3e-19
Identities = 63/166 (37%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Frame = +3
Query: 534 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 713
G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP + + G G AL+
Sbjct: 20 GFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALI 77
Query: 714 LAPTRELAQQIQQVAADF---------GHTSYVRNTCVFG-GAPKREQARDLERGVEIVI 863
+APTRELA QI V + G V + + G G + A E+ +VI
Sbjct: 78 VAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVI 137
Query: 864 ATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGLNHN-QKIIEQ 998
TPGRL + L + + L+LDEAD ++DMG Q II Q
Sbjct: 138 GTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSIISQ 181
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 85.8 bits (203), Expect = 1e-17
Identities = 49/145 (33%), Positives = 77/145 (53%)
Frame = +3
Query: 534 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 713
G++ P+ IQ + + ++++ AQ+G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 714 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 893
LAPTRELAQQIQ+V G V GG R+ L+ GV +V+ TPGR+ D +
Sbjct: 93 LAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMI 152
Query: 894 EKGTTNLQRCTYLVLDEADRMLDMG 968
++ VLDEAD ML G
Sbjct: 153 QRRALPTDAVQMFVLDEADEMLSRG 177
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 82.2 bits (194), Expect = 1e-16
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Frame = +3
Query: 534 GYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 710
G+++ TP+Q + + + +N V A+TG+GKTLA++L A + P ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 711 VLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRLID 887
+L+PTRELA QI + A + + +R + GG K + + RG ++IATPGRL D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 888 FLEKGTTNLQRCT-YLVLDEADRMLDMG 968
L+ T +LDEADR++DMG
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLMDMG 204
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 81.8 bits (193), Expect = 2e-16
Identities = 50/165 (30%), Positives = 80/165 (48%)
Frame = +3
Query: 534 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 713
GY+ P+ +Q++ G++++ AQ+G+GKT + + + I+ +R AL+
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALI 94
Query: 714 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 893
L+PTRELA QIQ V G V+ GG + L+ G +V TPGR+ D +
Sbjct: 95 LSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMI 154
Query: 894 EKGTTNLQRCTYLVLDEADRMLDMGLNHNQKIIEQYAXXXIDVXV 1028
+ + L+LDEAD +L+ G I +Y V V
Sbjct: 155 RRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVV 199
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 81.0 bits (191), Expect = 3e-16
Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +3
Query: 528 TMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 701
+M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L + ++ P P
Sbjct: 131 SMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KP 185
Query: 702 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 881
A+ LAP+RELA+QI V + G + V+ FG K + + +IVI TPG +
Sbjct: 186 QAICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKGAKIDAQIVIGTPGTV 241
Query: 882 IDFLEKGTTNLQRCTYLVLDEADRMLD 962
+D +++ + + VLDEAD MLD
Sbjct: 242 MDLMKRRQLDARDIKVFVLDEADNMLD 268
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 73.3 bits (172), Expect = 7e-14
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Frame = +3
Query: 504 IMCNKV*RTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPI 683
I+C + + E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENL-KKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP- 113
Query: 684 RRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK-REQARDLERGVEIV 860
G A+++APTREL +QI + A + ++ + K +E+A L ++
Sbjct: 114 ---GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMC 170
Query: 861 IATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 968
I TP RL+ ++ G + ++ + V+DEADR+ + G
Sbjct: 171 IGTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPG 205
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 67.3 bits (157), Expect = 4e-12
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 5/148 (3%)
Frame = +3
Query: 534 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-L 710
G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ DG ++ L
Sbjct: 70 GFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVL 123
Query: 711 VLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEIVIATPGR 878
VL TRELA QI+ A F + VR +GG + E +D + IV+ATPGR
Sbjct: 124 VLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGR 183
Query: 879 LIDFLEKGTTNLQRCTYLVLDEADRMLD 962
L + + + + VLDE D++L+
Sbjct: 184 LNALVREKILKVNSVKHFVLDECDKLLE 211
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 64.9 bits (151), Expect = 2e-11
Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 8/138 (5%)
Frame = +3
Query: 573 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 746
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
Query: 747 QQVAADFGHTSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATPGRLIDFLEKGTT- 908
+ + + ++ G R + L E ++++++TPGRL+D + +
Sbjct: 222 AKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESF 281
Query: 909 NLQRCTYLVLDEADRMLD 962
+LQ Y+V+DEADR+LD
Sbjct: 282 SLQHLRYMVIDEADRLLD 299
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.005
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 594 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 746
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.005
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 594 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 746
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 30.7 bits (66), Expect = 0.45
Identities = 26/93 (27%), Positives = 42/93 (45%)
Frame = +3
Query: 696 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 875
G + L TR +++ Q DF G P R L++G+E VI TP
Sbjct: 93 GRVERRLVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPC---GRCLKKGLECVIETPP 149
Query: 876 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGLN 974
RL+ ++ + NLQR +++ + M M L+
Sbjct: 150 RLLMNKDEISLNLQRLSHMETILSKLMPSMSLD 182
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.45
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 582 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 740
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.5 bits (63), Expect = 1.0
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 504 IMCNKV*RTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 671
I+C K + Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 266 ILCRKT--FLSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.5 bits (63), Expect = 1.0
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Frame = +3
Query: 591 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 770
+N++ TG GKT + A+V +N +R + +APT+ L Q Q+ A +
Sbjct: 87 ENVLVALPTGLGKTF---IAAVVMMNY---LRWFPKSYIVFMAPTKPLVTQ--QMEACYK 138
Query: 771 HTSYVRN-TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 947
T ++ T G + + TP +++ ++ G + R + LV+DEA
Sbjct: 139 ITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEA 198
Query: 948 DR 953
R
Sbjct: 199 HR 200
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 699 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 842
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,496,045
Number of Sequences: 5004
Number of extensions: 65777
Number of successful extensions: 222
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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