Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_C06.2
(1308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1090 + 24254172-24254624 38 0.023
05_05_0111 + 22479971-22480093,22480238-22480471 38 0.023
01_06_1288 - 36007432-36007851 38 0.023
01_01_0364 - 2856598-2857059 38 0.023
01_01_0360 - 2837046-2837507 38 0.023
05_07_0203 + 28391707-28392165 36 0.053
03_02_0560 + 9462996-9463454 36 0.053
01_01_0366 + 2871188-2871655 36 0.053
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 36 0.053
01_01_0358 - 2819235-2819696 36 0.053
01_01_0331 + 2685802-2686263 36 0.053
01_01_0329 + 2673479-2673940 36 0.053
08_02_1089 + 24250953-24251123 36 0.093
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 29 6.1
09_06_0354 - 22490833-22491417 29 6.1
>08_02_1090 + 24254172-24254624
Length = 150
Score = 37.5 bits (83), Expect = 0.023
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYTXS 561
LAKHAVSEGTKAVTK+T S
Sbjct: 132 LAKHAVSEGTKAVTKFTSS 150
>05_05_0111 + 22479971-22480093,22480238-22480471
Length = 118
Score = 37.5 bits (83), Expect = 0.023
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYTXS 561
LAKHAVSEGTKAVTK+T S
Sbjct: 100 LAKHAVSEGTKAVTKFTSS 118
>01_06_1288 - 36007432-36007851
Length = 139
Score = 37.5 bits (83), Expect = 0.023
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYTXS 561
LAKHAVSEGTKAVTK+T S
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139
>01_01_0364 - 2856598-2857059
Length = 153
Score = 37.5 bits (83), Expect = 0.023
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYTXS 561
LAKHAVSEGTKAVTK+T S
Sbjct: 135 LAKHAVSEGTKAVTKFTSS 153
>01_01_0360 - 2837046-2837507
Length = 153
Score = 37.5 bits (83), Expect = 0.023
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYTXS 561
LAKHAVSEGTKAVTK+T S
Sbjct: 135 LAKHAVSEGTKAVTKFTSS 153
>05_07_0203 + 28391707-28392165
Length = 152
Score = 36.3 bits (80), Expect = 0.053
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYT 555
LAKHAVSEGTKAVTK+T
Sbjct: 134 LAKHAVSEGTKAVTKFT 150
>03_02_0560 + 9462996-9463454
Length = 152
Score = 36.3 bits (80), Expect = 0.053
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYT 555
LAKHAVSEGTKAVTK+T
Sbjct: 134 LAKHAVSEGTKAVTKFT 150
>01_01_0366 + 2871188-2871655
Length = 155
Score = 36.3 bits (80), Expect = 0.053
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYT 555
LAKHAVSEGTKAVTK+T
Sbjct: 137 LAKHAVSEGTKAVTKFT 153
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 36.3 bits (80), Expect = 0.053
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYT 555
LAKHAVSEGTKAVTK+T
Sbjct: 672 LAKHAVSEGTKAVTKFT 688
>01_01_0358 - 2819235-2819696
Length = 153
Score = 36.3 bits (80), Expect = 0.053
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYT 555
LAKHAVSEGTKAVTK+T
Sbjct: 135 LAKHAVSEGTKAVTKFT 151
>01_01_0331 + 2685802-2686263
Length = 153
Score = 36.3 bits (80), Expect = 0.053
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYT 555
LAKHAVSEGTKAVTK+T
Sbjct: 135 LAKHAVSEGTKAVTKFT 151
>01_01_0329 + 2673479-2673940
Length = 153
Score = 36.3 bits (80), Expect = 0.053
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYT 555
LAKHAVSEGTKAVTK+T
Sbjct: 135 LAKHAVSEGTKAVTKFT 151
>08_02_1089 + 24250953-24251123
Length = 56
Score = 35.5 bits (78), Expect = 0.093
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKYTXS 561
LAKHAVSEG KAVTK+T S
Sbjct: 38 LAKHAVSEGAKAVTKFTSS 56
>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
Length = 407
Score = 29.5 bits (63), Expect = 6.1
Identities = 21/62 (33%), Positives = 23/62 (37%)
Frame = +2
Query: 497 GXNSPSTRSVKEPKPSRNTRAPSNFLHELR*LFQTHKTDARPYAVRMRVSVAFTSTKGPF 676
G SPS P P +PS H +F H ARP A RVS KG
Sbjct: 328 GLPSPSPPFPSPPSPPPPPTSPSPRQHRGWAIFAPHGGHARPLAALQRVSEEKRERKGEK 387
Query: 677 QG 682
G
Sbjct: 388 DG 389
>09_06_0354 - 22490833-22491417
Length = 194
Score = 29.5 bits (63), Expect = 6.1
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 505 LAKHAVSEGTKAVTKY 552
LA HA+SEGTKA++ Y
Sbjct: 177 LANHAISEGTKAISNY 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,580,292
Number of Sequences: 37544
Number of extensions: 189538
Number of successful extensions: 251
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4085517852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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