Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C06.2
         (1308 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98185-1|CAA66860.1|  123|Anopheles gambiae histone H2B protein.       44   7e-06
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    27   1.6  

>X98185-1|CAA66860.1|  123|Anopheles gambiae histone H2B protein.
          Length = 123

 Score = 44.4 bits (100), Expect = 7e-06
 Identities = 37/90 (41%), Positives = 43/90 (47%)
 Frame = +1

Query: 295 YCYXVLXQXXPXHRLVEXKPXXIMYXFVXRTSSXRXRCSKLLVSPXTTSVRRITSXXVQX 474
           Y Y VL Q  P    +  K   IM  FV        R S+L      ++   ITS  +Q 
Sbjct: 39  YIYKVLKQVHPDTG-ISSKAMSIMNSFVNDIFERIARKSRLAHYNKRST---ITSREIQT 94

Query: 475 FSXXCCYRVXLAKHAVSEGTKAVTKYTXSK 564
            +        LAKHAVSEGTKAVTKYT SK
Sbjct: 95  -AVRLLLPGELAKHAVSEGTKAVTKYTSSK 123


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 673 RAFCRCKCNRNTHTNSVRSCISFVS 599
           R FC   CN +T  N +  CI F S
Sbjct: 846 RIFCHWLCNHSTFGNIILVCIMFSS 870


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,766
Number of Sequences: 2352
Number of extensions: 7010
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 150827643
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)