Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_C05.2
(1298 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 88 3e-18
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 32 0.15
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 28 2.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 3.2
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 27 5.7
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 5.7
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 27 7.5
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 26 9.9
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo... 26 9.9
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 87.8 bits (208), Expect = 3e-18
Identities = 61/169 (36%), Positives = 88/169 (52%), Gaps = 11/169 (6%)
Frame = +3
Query: 372 GLFNKPELTTFE-GFYTLKDQAIEATDRLIEEATNSPTRP---MVEIFDELSDTLCKVAD 539
GLF L+ + GF L + A E +IE+ T +V FD +S+ LC V D
Sbjct: 65 GLFRNHFLSDKDTGFLRLAETASEKCKAVIEDLLLEDTEDGSIVVSKFDRISNLLCSVID 124
Query: 540 LAEFVRIAHPQPHFARAAEEACISISGVVEKLNTHKGLYEALKKSVE-----NGTSGDKH 704
L EFVR AHP AEEA + ++ LNTH+GLYE LK S++ T + +
Sbjct: 125 LFEFVRCAHPDKMVVMKAEEAYSYLFELMNTLNTHQGLYEKLKCSLQQTPTLKDTDPEAY 184
Query: 705 -LAELFLFDFEQSGIHLEENKRKSVVALNDVILQTGQRFMAGAA-KPRR 845
+ +FL DFE+SG++LE +KR S V + G+ F + +P+R
Sbjct: 185 TVGRVFLQDFEKSGVNLESSKRNSFVKKSSESATLGRAFFNNSMNRPQR 233
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 420 LKDQAIEATDRLIEEATNSPTRPMVEIFDELSDTLCKVA 536
LK+ ++E+ D LIE + SPT + + + +L DTL ++
Sbjct: 630 LKNDSVESYDWLIEYGSQSPTSEVTDRYKKLDDTLKSIS 668
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 670 FFKASYKPLCVFNFSTTPLMLMQASS 593
FF+A Y+PL + FS ++L AS+
Sbjct: 113 FFRAHYQPLTILKFSNDGMVLFTASN 138
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 571 NRISHELLKKPASALVE--LSKS*THTKVCTKL*RSQLRMEHLETNI 705
+R+ E+L + SALV S H+KVC KL S +++ LE +
Sbjct: 187 SRVKEEILVQEKSALVSDLASLQSDHSKVCEKLEVSSRQVQDLEKKL 233
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 384 KPELTTFE-GFYTLKDQAIEATDRLIEEATN 473
K E TT + GF+ + DQAI +T R+ E N
Sbjct: 60 KNETTTVDVGFFGVCDQAINSTSRVCHELRN 90
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +3
Query: 3 PXAPTYWAFXXLXPTLFPLALSLSQFLFKAKQSKIICNACLVSLVCCASINXL 161
P P + A+ + P F + L + Q + ++ +V +CC S+N +
Sbjct: 242 PSPPLFTAWTWIKPCFFNFVILLKRISIGDSQLFLHLHSRIVQTLCCFSLNFI 294
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 360 KERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEEATNSPTR 485
+E T L + P + E +LKD+ I+A + IE+ TN P +
Sbjct: 54 RELTSLHDAPTIVANE---SLKDRDIDAIYQNIEKTTNKPAQ 92
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 750 LEENKRKSVVALNDVILQTGQ-RFMAGAAKPRRVSRSAVPQNVR 878
L++ +K V L D + +FMA P V + AVP N+R
Sbjct: 280 LQDEYQKLVRGLQDANAANDEDQFMANPVLPEDVLKEAVPGNIR 323
>SPAC1399.04c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 220
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 578 MRLGVSYPHKLSKICNFAQCVGKLIKYLDHRT 483
+R G S + L+ CN++ VGKL+ D T
Sbjct: 86 LRAGESMEYGLAAACNYSVPVGKLLVQRDETT 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,844,310
Number of Sequences: 5004
Number of extensions: 71174
Number of successful extensions: 228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 709422546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -