Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_C05.2
(1298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 44 3e-04
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 33 0.37
08_01_0984 - 9952630-9954132 33 0.49
06_01_0354 - 2550061-2551033,2551125-2551385,2553079-2553274,255... 30 4.6
05_01_0127 - 863755-865182 30 4.6
05_01_0124 + 852358-853257 30 4.6
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 29 8.0
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686... 29 8.0
01_01_0900 + 7091970-7092068,7092175-7093131,7093210-7093968,709... 29 8.0
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 44.0 bits (99), Expect = 3e-04
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +3
Query: 579 FARAAEEACISISGVVEKLNTHKGLYEALKKSVENG---TSGDKHLAELFLFDFEQSGIH 749
F A++A + I ++ LNT+ LY A+ K+ G T + A DFE+ GIH
Sbjct: 51 FMDEADKASMRIYEHLQYLNTNTTLYNAILKAESEGVMLTEEARRAATTLRVDFEKGGIH 110
Query: 750 LEENKRKSVVALNDVILQTGQRFMA 824
L ++K + V LN I Q G+ M+
Sbjct: 111 LPKDKLEHVNHLNLEIAQLGRNCMS 135
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 33.5 bits (73), Expect = 0.37
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 565 TPNRISHELLKKPASALVELSKS*THTKVCTKL*RSQLRMEHLETNI*QNYSCSTLNRAE 744
+PN ++ ++ +P + LV S + HT C KL S L ++ ++ YS LN+
Sbjct: 374 SPNNVADKVTSQPHAQLVRPSPAENHTVNCDKLNNSDLAIDEGTISLSSQYSQELLNKLN 433
Query: 745 Y 747
+
Sbjct: 434 H 434
>08_01_0984 - 9952630-9954132
Length = 500
Score = 33.1 bits (72), Expect = 0.49
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 783 LNDVILQTGQRFMAG--AAKPRRVSRSAVPQNVRHFFSTEGDNIIXSGVYAE 932
L DV+ +G F A AA R+ + P NVRH F+T DN +AE
Sbjct: 60 LTDVLAASGHSFTAHGPAATNMRLFVTCEPDNVRHIFTTNHDNYPKGQHFAE 111
>06_01_0354 -
2550061-2551033,2551125-2551385,2553079-2553274,
2553443-2553632,2553750-2553983
Length = 617
Score = 29.9 bits (64), Expect = 4.6
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +3
Query: 531 VADLAEFVRIAHPQPHFARAAEEACISISGVVEKLNTHKGLYEALKKSVENGTSGDKHLA 710
+ADLA R +HP P R+ + S+S + LN H G S +GT +
Sbjct: 15 LADLAR--RRSHPPPGGGRSGDSLAASVSSLAAALNPHGG---GASSSSSSGTRVLDAVL 69
Query: 711 ELFLFD 728
L FD
Sbjct: 70 SLMCFD 75
>05_01_0127 - 863755-865182
Length = 475
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 596 FSSSCEMRLGVSYPHKLS-KICNFAQCVGKLIKYLDHRTRGAVGGLF 459
FS E V P +LS ++C+ A G L D+R G V GLF
Sbjct: 275 FSIGAEQFGSVYVPPRLSSRMCHLANLDGSLCAVFDYRGAGGVYGLF 321
>05_01_0124 + 852358-853257
Length = 299
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 596 FSSSCEMRLGVSYPHKLS-KICNFAQCVGKLIKYLDHRTRGAVGGLF 459
FS E V P +LS ++C+ A G L D+R G V GLF
Sbjct: 95 FSIGAEQFGSVYVPPRLSSRMCHLANLDGSLCAVFDNRVEGDVYGLF 141
>12_02_0858 + 23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 768 KSVVALNDVILQTGQRFMAGAAKPRRVSRSAVP 866
K VVA D ++ G+R MA +PRR + VP
Sbjct: 1151 KHVVARLDRLIDIGERKMANPRRPRRHGKDPVP 1183
>03_05_0026 +
19966616-19966703,19967992-19968058,19968599-19968677,
19969140-19969231,19969961-19970396,19973749-19974099
Length = 370
Score = 29.1 bits (62), Expect = 8.0
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +3
Query: 603 CISISGVVEKLNTHKGLYEALKKSVENGTSGDKHLAELF--LFDFEQSGIHLE 755
CI++ VE K LYE LK S E T + L E L Q G H++
Sbjct: 240 CIALQAKVEDKGKSKVLYEELKTSRERLTISHEKLKEAHDNLLSTTQHGAHID 292
>01_01_0900 +
7091970-7092068,7092175-7093131,7093210-7093968,
7094322-7094366
Length = 619
Score = 29.1 bits (62), Expect = 8.0
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +3
Query: 345 IFDSLKERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEEATNSPTRPMVEIFDELSDTL 524
+FD + E G+ P++ + ++ Q E + L+ + RP V F +
Sbjct: 388 VFDKMIE-AGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGW 446
Query: 525 CKVADLAEFVRI 560
C VAD+ VR+
Sbjct: 447 CSVADMGNAVRV 458
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,929,118
Number of Sequences: 37544
Number of extensions: 471137
Number of successful extensions: 1231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4050598896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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