Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C04.2
         (1370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.21 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   8.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +3

Query: 1149 PPPPPPGVFXXXGGGXVXPXPPXFXVF*GGA 1241
            PPPPPPGV    G G   P PP   V  GG+
Sbjct: 763  PPPPPPGV---AGAGPPPPPPPPPAVSAGGS 790



 Score = 31.1 bits (67), Expect = 0.37
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +3

Query: 1149 PPPPPPGVFXXXGGGXVXPXPPXFXVF*GGAAPP 1250
            PPPPPP V          P PP   +  GG  PP
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIM-GGPPPP 764


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 1132 PPXXXXPPPPPPG 1170
            PP    PPPPPPG
Sbjct: 5    PPGNPPPPPPPPG 17


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 1149 PPPPPPGVFXXXGGGXVXP 1205
            PPPPPP +    GG  V P
Sbjct: 947  PPPPPPPLVSAAGGKFVSP 965


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,144
Number of Sequences: 5004
Number of extensions: 15440
Number of successful extensions: 250
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 757114818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)