Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C04.2
         (1370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174...    30   4.9  
06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791           30   4.9  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   8.6  

>09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,
            1741559-1741641,1741733-1741784,1742038-1742105,
            1742279-1742345,1742426-1742505,1742576-1742640,
            1742785-1742847,1743271-1743427,1743511-1743588,
            1743677-1744219,1744321-1744497,1744534-1744788,
            1745270-1745329,1745874-1745888,1746123-1746135,
            1746819-1746934
          Length = 793

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -1

Query: 1244 GXPPLKXXKXGRGGXHXPSPXXXKHPGGGGGGXXXXGG 1131
            G  P +    G GG     P      GGGGGG    GG
Sbjct: 28   GRGPSRWSSGGGGGGSGSPPHRFSRGGGGGGGDGGGGG 65


>06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791
          Length = 507

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = -1

Query: 1250 GXGXPPLKXXKXGRGGX---HXPSPXXXK--HPGGGGGGXXXXGG 1131
            G   PPL      RGG    H P+P      H GGGGGG    GG
Sbjct: 24   GGAAPPLTAT-VARGGADLSHAPTPASHSGSHGGGGGGGWVGEGG 67


>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
            3308247-3308315,3308427-3308513,3308753-3308858,
            3309118-3309237,3309327-3309406,3309497-3309878,
            3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 1123 GRXPPXXXXPPPPPPG 1170
            G  PP    PPPPPPG
Sbjct: 46   GAPPPFLAPPPPPPPG 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,053,956
Number of Sequences: 37544
Number of extensions: 419431
Number of successful extensions: 18894
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13769
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4329950544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)