Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C03.2
         (1294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.086
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.15 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   0.55 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   7.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   7.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   7.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.086
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 407 PPPPPPPPXXKXSXXPPXXPFXP 339
           PPPPPPPP    +  PP  P  P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 402 PPPPPPXEXXFXXXPXPPFXSPP 334
           PPPPPP        P PP   PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 405 PPPPPPPXEXXFXXXPXPPFXSP 337
           PPPPPPP        P PP   P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 403 PPPPPPLXXXXXPXPXPXLFXP 338
           PPPPPP      P P P    P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP 753


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 407 PPPPPPPPXXKXSXXPPXXP 348
           PPPPPPPP  +    PP  P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 29.9 bits (64), Expect = 0.80
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 407 PPPPPPPPXXKXSXXPPXXP 348
           PPPPPPP     S  PP  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
 Frame = -2

Query: 405 PP--PPPPPXEXXFXXXPXPPFXSPP 334
           PP  PPPPP    F     PP   PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect(2) = 0.55
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -3

Query: 413 LXPPPPPPPP 384
           L PPPPPPPP
Sbjct: 305 LPPPPPPPPP 314



 Score = 21.0 bits (42), Expect(2) = 0.55
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 407 PPPPPPPPXXKXSXXP 360
           PPPPP     K S  P
Sbjct: 310 PPPPPSNDFWKDSNEP 325


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 405 PPPPPPPXEXXFXXXPXPP 349
           PPPPPPP        P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPP 355



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 404 PPPPPPPXXKXSXXPP 357
           PPPPPPP  +    PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 405 PPPPPPPXEXXFXXXPXPPFXSPPXXF 325
           PPPPPPP E         P    P  F
Sbjct: 370 PPPPPPPPELLNHSPKSRPLGDKPYLF 396



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 407 PPPPPPPP 384
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 407 PPPPPPPP 384
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 407 PPPPPPPP 384
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 407  PPPPPPPP 384
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 407 PPPPPPPP 384
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 407 PPPPPPPP 384
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 413 LXPPPPPPPPXXKXSXXPPXXP 348
           + P PPPPPP    +   P  P
Sbjct: 1   MAPAPPPPPPAPAPAAAAPAPP 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,290
Number of Sequences: 5004
Number of extensions: 13074
Number of successful extensions: 301
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)